BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0109.p
         (106 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310353|ref|YP_003774445.1| ribokinase [Herbaspirillum sero...   202   6e-54

>gi|300310353|ref|YP_003774445.1| ribokinase [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score =  202 bits (513), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/106 (99%), Positives = 106/106 (100%)

Query: 1   VLLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGM 60
           VLLERGVGCALITLGAQG+LLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGM
Sbjct: 214 VLLERGVGCALITLGAQGSLLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGM 273

Query: 61  SAEEAARLATAVAAISVTRPGTAPSMPSRQEALALLDTHASVLAQA 106
           SAEEAARLATAVAAISVTRPGTAPSMPSRQEALALLDTHASVLAQA
Sbjct: 274 SAEEAARLATAVAAISVTRPGTAPSMPSRQEALALLDTHASVLAQA 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.127    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 217,729
Number of extensions: 4096
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 34
Effective length of database: 1,278,950
Effective search space: 43484300
Effective search space used: 43484300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)