BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0094.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory ox...   296   6e-82
gi|300313595|ref|YP_003777687.1| peroxiredoxin protein [Herbaspi...    55   3e-09

>gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  296 bits (757), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MTSGKTFQLADYQGKNLVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTEIFGVSRDSLK 60
           MTSGKTFQLADYQGKNLVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTEIFGVSRDSLK
Sbjct: 19  MTSGKTFQLADYQGKNLVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTEIFGVSRDSLK 78

Query: 61  SHENFKAKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVIDGAGKVVKEW 120
           SHENFKAKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVIDGAGKVVKEW
Sbjct: 79  SHENFKAKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVIDGAGKVVKEW 138

Query: 121 RGVKVPAHVDEVLAFIQTLA 140
           RGVKVPAHVDEVLAFIQTLA
Sbjct: 139 RGVKVPAHVDEVLAFIQTLA 158


>gi|300313595|ref|YP_003777687.1| peroxiredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 187

 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 10  ADYQGKNLVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTEIFGVSRDSLKSHENF---- 65
           A  +GK  V  FYP D T  C TE     D +A+F+    EI+GVS D+  +H+ +    
Sbjct: 27  ATLKGKWSVFVFYPADFTFVCPTELEDLADNYAEFKKLGVEIYGVSTDTHFAHKAWHDTS 86

Query: 66  KAKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRGVERSTFVIDGAGKV 116
           +A   + + L+ DP  TL   F+V+  +   G  +RG    TFVI+  G++
Sbjct: 87  EAIKKVQYPLVGDPTATLARNFEVLIEEE--GLALRG----TFVINPEGQI 131


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 420,533
Number of extensions: 14791
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)