BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0084.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311389|ref|YP_003775481.1| SOS-response transcription repr...   436   e-124
gi|300312765|ref|YP_003776857.1| SOS mutagenesis protein [Herbas...    57   9e-10

>gi|300311389|ref|YP_003775481.1| SOS-response transcription
           repressor [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  436 bits (1121), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/216 (99%), Positives = 216/216 (100%)

Query: 1   MLKLTARQEQILNLIKNAIENTGFPPTRAEIAAELGFRSANAAEEHLQALARKGAIEISP 60
           MLKLTARQEQILNLIKNAIENTGFPPTRAEIAAELGFRSANAAEEHLQALARKGAIEISP
Sbjct: 1   MLKLTARQEQILNLIKNAIENTGFPPTRAEIAAELGFRSANAAEEHLQALARKGAIEISP 60

Query: 61  GTSRGIRLREPGGQAASRQMALPHPALMQLSLPLIGRVAAGSPILAQEHVEKTYQVDPAM 120
           GTSRGIRLREPGGQAASRQMALPHPALMQLSLPLIGRVAAGSPILAQEHVEKTYQVDPAM
Sbjct: 61  GTSRGIRLREPGGQAASRQMALPHPALMQLSLPLIGRVAAGSPILAQEHVEKTYQVDPAM 120

Query: 121 FSGKPDYLLKVRGMSMRDAGILDGDLLAVRKTDQARNGQIVVARLADEVTVKRYQKTGSV 180
           FSGKPDYLLKVRGMSMRDAGILDGDLLAVRKTDQARNGQIVVARLADEVTVKRYQKTGSV
Sbjct: 121 FSGKPDYLLKVRGMSMRDAGILDGDLLAVRKTDQARNGQIVVARLADEVTVKRYQKTGSV 180

Query: 181 ITLFPENPDFEPIIVKPNEEQFALEGLAVGLMRSWN 216
           ITLFPENPDF+PIIVKPNEEQFALEGLAVGLMRSWN
Sbjct: 181 ITLFPENPDFKPIIVKPNEEQFALEGLAVGLMRSWN 216


>gi|300312765|ref|YP_003776857.1| SOS mutagenesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score = 57.4 bits (137), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 10/129 (7%)

Query: 90  LSLPLIGRVAAGSPILAQEHVE-----KTYQVDPAMFSGKPDYLLKVRGMSMRDAGILDG 144
           L+L +  ++ AG P  A ++         Y VD    +    +L  V G SM  A I++G
Sbjct: 15  LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACT----FLFDVAGWSMSGAHIVEG 70

Query: 145 DLLAVRKTDQARNGQIVVARLADEVTVKRYQKTGSVITLFPENPDFEPIIVKPNEEQFAL 204
           D + V ++   + G IVVA +  E T+KR +       L PENPDF PI    + E   +
Sbjct: 71  DKVVVDRSVSPQPGHIVVAIVNGEFTIKRLRLVNGAYELHPENPDFRPIRFG-DGEVLEV 129

Query: 205 EGLAVGLMR 213
            G+ VG+ R
Sbjct: 130 FGVVVGVAR 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 705,393
Number of extensions: 30411
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)