BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0083.p (658 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 1357 0.0 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 268 1e-72 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 222 8e-59 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 165 1e-41 gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [... 57 7e-09 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 1357 bits (3513), Expect = 0.0, Method: Compositional matrix adjust. Identities = 658/658 (100%), Positives = 658/658 (100%) Query: 1 MSTRKNSNKHGKPATPPPKHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLVFA 60 MSTRKNSNKHGKPATPPPKHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLVFA Sbjct: 1 MSTRKNSNKHGKPATPPPKHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLVFA 60 Query: 61 NHARGLVAMHEGKFADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIR 120 NHARGLVAMHEGKFADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIR Sbjct: 61 NHARGLVAMHEGKFADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIR 120 Query: 121 IDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAV 180 IDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAV Sbjct: 121 IDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAV 180 Query: 181 AVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLK 240 AVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLK Sbjct: 181 AVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLK 240 Query: 241 LNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTY 300 LNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTY Sbjct: 241 LNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTY 300 Query: 301 NNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVT 360 NNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVT Sbjct: 301 NNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVT 360 Query: 361 RERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVA 420 RERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVA Sbjct: 361 RERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVA 420 Query: 421 LHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLS 480 LHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLS Sbjct: 421 LHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLS 480 Query: 481 ADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATLFQLPNIEFY 540 ADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATLFQLPNIEFY Sbjct: 481 ADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATLFQLPNIEFY 540 Query: 541 SLQKGKPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHP 600 SLQKGKPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHP Sbjct: 541 SLQKGKPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHP 600 Query: 601 TWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKAGR 658 TWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKAGR Sbjct: 601 TWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKAGR 658 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 268 bits (685), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 214/645 (33%), Positives = 312/645 (48%), Gaps = 69/645 (10%) Query: 28 VRKALDLLDSRKTDEAKALCMAVLSRNPTLVFANHARGLVAMHEGKFADAEAYLRKAIEA 87 ++KAL L + A+ L VL + P AN+ G++ +H+ + AEA L KAIE Sbjct: 12 LQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAEAQLAKAIEL 71 Query: 88 DPENAEYMSNLAGTVLSQDRIDEAIALYEHAIRIDRDHRASRIGLANALHEKNDPEASVA 147 +P++ + + AG + R DEA+A Y+ + ++ D Sbjct: 72 NPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNAD----------------------- 108 Query: 148 YFEDAVKREPNAPGPLSHLGRALIECKRYNEAVAVILKSLELQISFAPSHTALGEAFHAM 207 + E + R G AL R EA+A + ++ L A + G H Sbjct: 109 FVEALLAR-----------GAALRRLGRNREALADLERATALAPDNADAWFQRGNVLHDS 157 Query: 208 EMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNAYVK 267 Y +A ES++ A+ L P A + ++ N++D+A R +E+ P A Sbjct: 158 YAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISN 217 Query: 268 LGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALELR 327 G F R +A++ +++AL +D + + N G+ E+A ++R+A L+ Sbjct: 218 RGYVLFKMQ-RPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRFEEASESYRRAKALK 276 Query: 328 PNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDGKSSLA 387 P+ +A N AL L QG GW+ E+R T + R + P W G+ L Sbjct: 277 PDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQ-----PLWLGEQPLE 331 Query: 388 GKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSPEVTLVRESDPL 447 GK ILL EQGFGD++QF+RY ++ +GARV L V+ L R P VT V +D Sbjct: 332 GKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLAGL-PGVTQVIGTDHF 390 Query: 448 --PPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLSQSPEKLRV 505 PP D LMSLP A T + DIP P YL + SSW ++L ++ LRV Sbjct: 391 MRPPFDFHCPLMSLPLACKTFSEADIPRAP--YLLPE---ASSWAAWHQRLPRN-RALRV 444 Query: 506 GVVWGGNPEHGN------DRHRSIAMDKFATLFQLPN----IEFYSLQKGKPLDAFKALP 555 G+VW G+ + D RS+ A L +L +EFYSLQ G+ DA L Sbjct: 445 GLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELAREHAALEFYSLQVGQ--DAVAQLH 502 Query: 556 PGLPIFNLGDDC----QDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDW 611 P+ +L DC DFA+T A +ANLDL+++VDTSV HLAGALG P W+L H W Sbjct: 503 -AHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCW 561 Query: 612 RWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKKA 656 RW +REDSPWY GM +F Q W+ V+ +V ALQQ+ A Sbjct: 562 RWQVEREDSPWYGGMTIFGQRTAGQWDEVIARV---RAALQQQLA 603 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 222 bits (565), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 190/582 (32%), Positives = 289/582 (49%), Gaps = 53/582 (9%) Query: 74 FADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIRI----DRDHRASR 129 +A+A+A L ++A P + + + L +Q R EA ++ A+R+ + A R Sbjct: 19 YAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRLLPPDSEEALALR 78 Query: 130 IGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAVAVILKSLEL 189 L A +E+ FEDA L R LIE +L Sbjct: 79 YRLGRAFYEEG-------RFEDAFL-----------LYRELIE------------SGWQL 108 Query: 190 QISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHE 249 F + AL + + +A+ + A+ DP ++ A + + + D A + Sbjct: 109 PELFVAAAAALQGMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQ 168 Query: 250 HLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHD 309 + + + + + ++ G + +F++A+R +++AL + + + + G Sbjct: 169 CIHQALRLDDQRAQYWLAAGLVEHAQG-QFEEALRYYDQALILAPELVDAHVSRGTTLAR 227 Query: 310 HGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRL 369 E+AI ++R+AL + A N+ALSLL+ G L++ W +E R R + YR Sbjct: 228 LRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRS-ADPYR- 285 Query: 370 IHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYR 429 IP W+G SSLAGK ILL EQG GD+IQF RYV ++L GA+V L V L Sbjct: 286 ----HATIPAWNGGSSLAGKRILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLA 341 Query: 430 LFQSYS--PEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPS-VPGGYLSADPILK 486 L S + +TLV +PLP D LMSLP T DDIP+ VP YL ADP + Sbjct: 342 LMHSLAVPTPLTLVAMGEPLPEVDFQLPLMSLPLVCNT-RADDIPAAVP--YLCADPARR 398 Query: 487 SSWGEKIRQLS-QSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATL-FQLPNIEFYSLQK 544 W E++ L+ +SP ++R+G+V GN + ND RSI + +FA L P ++F+ +Q Sbjct: 399 ILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQP 458 Query: 545 G--KPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTW 602 + + PG +G DFADTAA +A +DLV+SVDT+ HLAGA+ P W Sbjct: 459 DLRQADRQWCEQQPGW--HWVGAAINDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVW 516 Query: 603 VLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKV 644 + LP+ PDWRWL + DSPWYP RLFRQ W+ V+ + Sbjct: 517 IALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVILTL 558 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 172/373 (46%), Gaps = 18/373 (4%) Query: 277 DRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHN 336 +R ++A+ + A + D AL N+ I G +E A F +AL P++P A Sbjct: 157 NRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVG 216 Query: 337 IALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLI-PKWDGKSSLAGKYILLMH 395 A LL Q H EGW HE+R E L + D P+W + GK +LL Sbjct: 217 RAHMLLSQQHYAEGWRAHEARFGIAE------LARRGIDSPRPRWRAGEPVRGKRVLLWA 270 Query: 396 EQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYV 455 EQG GD++QF RY+ +V Q A V+L L + P+V + P D Sbjct: 271 EQGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLPQVRCMANPGEAPDHDLHAS 330 Query: 456 LMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLSQS-PEKLRVGVVWGGNPE 514 L+S + D P YL+A P W + L + P + R+G+ W G Sbjct: 331 LLS--LPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQY 388 Query: 515 HGNDRHRSIAMDKFATLFQLPNIEFYSLQKGKPLD---AFKALPPGLPIFNLGDDCQDFA 571 R I +D A L+ LP +F SLQ P A L L L D+A Sbjct: 389 ATVHHSRDIPLDALAPLWTLPA-DFVSLQVEVPAGDQAAHATLAQRLHTPTL----VDWA 443 Query: 572 DTAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQ 631 DTAA + LDLV+SVDT+VVHLAGALG P + L + +WRW +PWYP ++L RQ Sbjct: 444 DTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLRQ 503 Query: 632 PALSDWESVLTKV 644 W V+ ++ Sbjct: 504 RERGQWGPVVEEM 516 >gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 600 Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 140/331 (42%), Gaps = 52/331 (15%) Query: 19 KHPLQDLLDVRKALDLLDSRKTDEAKALCMAVL---SRNPTLVFANHARGLVAMHEGKFA 75 K+P + V A L++ + +A+ A+L +PT +FA G+++ + Sbjct: 266 KYPDAREVRVAYARTLVEQKDYKDARTQFEALLKEDGEDPTTLFA---LGVLSAQTDQLK 322 Query: 76 DAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIR-IDRDHRAS------ 128 DAE YL++ ++ E + + +L RI E + A+R +DR + Sbjct: 323 DAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERRDIDGALRYLDRGEPGTEGYVNI 382 Query: 129 RIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRA----LIECKRYNEAVAVIL 184 ++ A L K+D E + E A + E G L +A L + R EA VI Sbjct: 383 QVRRAQLLARKSDIEGARKALE-AAQSESTNDGEQLQLLQAESALLRDANRNQEAADVIK 441 Query: 185 KSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRI 244 LE F P++T L + A++LD KL + Sbjct: 442 AGLE---RF-PNNTDL---------------LYDYAMVLD---------------KLGKY 467 Query: 245 DEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIG 304 DE L RVI++AP + +AY LG S + R +A+ + KA E+ + A +++G Sbjct: 468 DEMEASLRRVIKLAPGNQHAYNALGYSLADRNVRLPEALELIRKAAEMAPEDAFIADSLG 527 Query: 305 AIQHDHGDLEDAIGNFRKALELRPNYPTARH 335 + G L++A R+A LRP+ H Sbjct: 528 WVLFRMGRLDEAETQMRRAYGLRPDAEIGVH 558 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,098,385 Number of extensions: 88109 Number of successful extensions: 323 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 279 Number of HSP's successfully gapped: 8 Length of query: 658 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 567 Effective length of database: 1,188,985 Effective search space: 674154495 Effective search space used: 674154495 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)