BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0082.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311386|ref|YP_003775478.1| flagellin filament structural p...   699   0.0  

>gi|300311386|ref|YP_003775478.1| flagellin filament structural
           protein [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/362 (100%), Positives = 362/362 (100%)

Query: 1   MASVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQVKG 60
           MASVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQVKG
Sbjct: 1   MASVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQVKG 60

Query: 61  LAVAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLS 120
           LAVAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLS
Sbjct: 61  LAVAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLS 120

Query: 121 QEVFRVLNGTSFNGQNLFTGTGQGASAGTGSDSANVSASLTLSFQVGANVSDNKLNDQIT 180
           QEVFRVLNGTSFNGQNLFTGTGQGASAGTGSDSANVSASLTLSFQVGANVSDNKLNDQIT
Sbjct: 121 QEVFRVLNGTSFNGQNLFTGTGQGASAGTGSDSANVSASLTLSFQVGANVSDNKLNDQIT 180

Query: 181 ITLDDLSNNGTMANVIGTSAKGLIGLGNTSGVSTAQATYTSAKAALDNLFATGSSLSSSA 240
           ITLDDLSNNGTMANVIGTSAKGLIGLGNTSGVSTAQATYTSAKAALDNLFATGSSLSSSA
Sbjct: 181 ITLDDLSNNGTMANVIGTSAKGLIGLGNTSGVSTAQATYTSAKAALDNLFATGSSLSSSA 240

Query: 241 LASSAVTLQATVDSAKLALDQAVAAPSAQSDAQKAIQNLDKAISLISSKRAEFGAVQNRF 300
           LASSAVTLQATVDSAKLALDQAVAAPSAQSDAQKAIQNLDKAISLISSKRAEFGAVQNRF
Sbjct: 241 LASSAVTLQATVDSAKLALDQAVAAPSAQSDAQKAIQNLDKAISLISSKRAEFGAVQNRF 300

Query: 301 SAVISNLQVSSENITSSRSRIMDTDYAQETANLTRAQILQQAGNAMLSQANSAPQQVLSL 360
           SAVISNLQVSSENITSSRSRIMDTDYAQETANLTRAQILQQAGNAMLSQANSAPQQVLSL
Sbjct: 301 SAVISNLQVSSENITSSRSRIMDTDYAQETANLTRAQILQQAGNAMLSQANSAPQQVLSL 360

Query: 361 LK 362
           LK
Sbjct: 361 LK 362


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.306    0.118    0.297 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 770,282
Number of extensions: 25237
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 131 (55.1 bits)