BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0080.p (690 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 pro... 1324 0.0 gi|300310454|ref|YP_003774546.1| flagellar hook-associated prote... 923 0.0 gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herb... 709 0.0 >gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 1324 bits (3427), Expect = 0.0, Method: Compositional matrix adjust. Identities = 687/690 (99%), Positives = 689/690 (99%) Query: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 Query: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT Sbjct: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 Query: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL Sbjct: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 Query: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND Sbjct: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 Query: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN Sbjct: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 Query: 361 IAPVANGSGNIDLTQVKLAINSANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTSD 420 IAPVANGSGNIDLTQVKLAIN+ANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTSD Sbjct: 361 IAPVANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTSD 420 Query: 421 YAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNIS 480 YAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNIS Sbjct: 421 YAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNIS 480 Query: 481 NDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLRN 540 NDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLRN Sbjct: 481 NDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLRN 540 Query: 541 TLFSSVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFTGTDPDPTNT 600 TLFS+VDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLF GTDPDPTNT Sbjct: 541 TLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGTDPDPTNT 600 Query: 601 TSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTNQ 660 TSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTNQ Sbjct: 601 TSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTNQ 660 Query: 661 FNQLNLTLSSMQSTQSYLTQQLANLAKSSG 690 FNQLNLTLSSMQSTQSYLTQQLANLAKSSG Sbjct: 661 FNQLNLTLSSMQSTQSYLTQQLANLAKSSG 690 >gi|300310454|ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/690 (70%), Positives = 577/690 (83%), Gaps = 15/690 (2%) Query: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 MATSTGTISTSAGPLDVATLV+QLIS ES+S+LTPL + SS+NTLISAYGSLK+A ++Y Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 QSA+K +T+ASFSAQK+++SNAGTG+NLTTDPF+AD N D+STK+LAQK+QSAG ++G T Sbjct: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 Query: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 FNAGDS+AIK+GTN P F+TLQAN+TLAGVRDAINA K G TASI TDG+GDHLVLESNT Sbjct: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 Query: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 GGTANTIK+TANNSLS YDPSS+ ST+TQ QAPRDA+KAA+G Y +AV+QLAQA K+ Sbjct: 181 GGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 Query: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 SSA IAPGSTFDNG+LAIKTG+GST II+P TN+LAGVRDAIN+SDAGVNA+IV+DGTND Sbjct: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 Query: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 HLV+TAK++GS NT+++TGT NFA FN DPSGT+T+ VA+ QTYS+G+L L+VG SF Sbjct: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 Query: 361 IAPV-ANGSGNIDLTQVKLAINSANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTS 419 I P +GSG I L V AIN AN GVTASITNDGS DHLVLTP+G T AV LTG Sbjct: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPSG---TDAVKLTGAG 417 Query: 420 DYAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNI 479 DY+ L+ S MGQL KAQDAKL++DGV VTS +NKV NVISGVTLNLSKVTTSADNF+L+I Sbjct: 418 DYSDLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSADNFSLSI 477 Query: 480 SNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLR 539 +NDTSG++TAAN+FVTAYNTLAKAVA +T QTPSTT GQA+T +PLASESSV +M Q+R Sbjct: 478 NNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVR 537 Query: 540 NTLFSSVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFTGTDPDPTN 599 NT+ ++ G NG LS IGISFQKDGTLALD+TKL+ AA +F GI LF Sbjct: 538 NTMLGAL-GDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLF--------- 587 Query: 600 TTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTN 659 TS+ NG+V KLQ LM +L ++G++A+KT GLQ SLKI D+QTA +RL +LKD YTN Sbjct: 588 -TSATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTN 646 Query: 660 QFNQLNLTLSSMQSTQSYLTQQLANLAKSS 689 QFN+LN+TL++MQS QSYLTQQLA L+KSS Sbjct: 647 QFNRLNVTLATMQSRQSYLTQQLAKLSKSS 676 >gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/694 (55%), Positives = 503/694 (72%), Gaps = 22/694 (3%) Query: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 MATSTG+ISTSAGPLDVA LV+QL+S ES+S+LTPL ++A S+N LISAYG L +A++TY Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTT--DPFSADINGDDSTKILAQKIQSAGISSG 118 Q+A+ +T+A FSAQK++VSN G S+ + D SADIN D STK AQ I+SAG +SG Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINSDASTKAQAQIIKSAGFASG 120 Query: 119 TTFNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLES 178 F AGDS+AIK+G SP F+TL+A++T+ G+RD INA + G TAS+V D AGDHLVLES Sbjct: 121 HLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 Query: 179 NTGGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAE 238 NT GTAN +KV ANNSLS +D S P MTQTQA RDAT AA G+YA++V QLAQ+ Sbjct: 181 NTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 Query: 239 KLSSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGT 298 KLSSA IAPGSTFD G+LAIK GSGSTT+IKP +NTLAGVRDAIN++ AGVNA+IVSDG Sbjct: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 Query: 299 NDHLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSS 358 +HLV+TAK SG+ N ++I+GT +FAVF+SDPSG ++ +V + +S G + L VG + Sbjct: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 Query: 359 FNIAPVANGSGNID-LTQVKLAINSANAGVTASITNDGSND----HLVLTPTGSSATAAV 413 ++ P + +G L V AIN A AGV+A++ +G D LVL+ +GS V Sbjct: 361 ISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSD---PV 417 Query: 414 SLTGTSDYAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSAD 473 SL G+ DYA L+ S MGQL K QDA+LSIDGV +T+ +N +++ ISGVTLNL+K T++ D Sbjct: 418 SLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATD 477 Query: 474 NFTLNISNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQT 533 TL ISND+SG+ A NSFV A+NTLAKA+A MT Q P+ GQA LA ES V+ Sbjct: 478 KLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMVRA 537 Query: 534 IMSQLRNTLFSSVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFTGT 593 + +LRN + +S+ GN + +L+ IG+ F+KDGTL LDS +L+ A NF +A LF G Sbjct: 538 LTGELRNAVLASMP-GNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAG- 595 Query: 594 DPDPTNTTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNL 653 K G+V + ++L+ +L + G++A KT GLQ SLKI D+Q A ++RL+NL Sbjct: 596 ----------KEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANL 645 Query: 654 KDAYTNQFNQLNLTLSSMQSTQSYLTQQLANLAK 687 +D+YTNQFN+LN+TLS MQ++Q+YLTQQLA L + Sbjct: 646 RDSYTNQFNRLNVTLSKMQASQNYLTQQLARLRR 679 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.305 0.119 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,708,905 Number of extensions: 65943 Number of successful extensions: 297 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 3 Length of query: 690 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 598 Effective length of database: 1,184,250 Effective search space: 708181500 Effective search space used: 708181500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits) S2: 134 (56.2 bits)