BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0072.p
         (585 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059...  1157   0.0  

>gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059
           [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score = 1157 bits (2994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/569 (100%), Positives = 569/569 (100%)

Query: 17  MPGSQPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDG 76
           MPGSQPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDG
Sbjct: 1   MPGSQPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDG 60

Query: 77  GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGI 136
           GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGI
Sbjct: 61  GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGI 120

Query: 137 SQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPG 196
           SQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPG
Sbjct: 121 SQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPG 180

Query: 197 RYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDM 256
           RYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDM
Sbjct: 181 RYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDM 240

Query: 257 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEA 316
           QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEA
Sbjct: 241 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEA 300

Query: 317 NSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKD 376
           NSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKD
Sbjct: 301 NSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKD 360

Query: 377 ETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVK 436
           ETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVK
Sbjct: 361 ETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVK 420

Query: 437 EAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRV 496
           EAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRV
Sbjct: 421 EAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRV 480

Query: 497 LRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGESEVDERAQY 556
           LRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGESEVDERAQY
Sbjct: 481 LRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGESEVDERAQY 540

Query: 557 KANLETAKQWAKNDPKLVASIIKSWVNNE 585
           KANLETAKQWAKNDPKLVASIIKSWVNNE
Sbjct: 541 KANLETAKQWAKNDPKLVASIIKSWVNNE 569


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,598,612
Number of extensions: 57801
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 495
Effective length of database: 1,193,720
Effective search space: 590891400
Effective search space used: 590891400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 133 (55.8 bits)