BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0061.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein ...   484   e-138
gi|300310129|ref|YP_003774221.1| type III secretion HrcR transme...   138   6e-34

>gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein
           FliP [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  484 bits (1246), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/244 (99%), Positives = 244/244 (100%)

Query: 22  LRNRYCWLALLCLPLAASAQQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLM 81
           +RNRYCWLALLCLPLAASAQQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLM
Sbjct: 1   MRNRYCWLALLCLPLAASAQQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLM 60

Query: 82  MTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENK 141
           MTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENK
Sbjct: 61  MTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENK 120

Query: 142 IQMMEALDKGAQPLKEFMLKQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELK 201
           IQMMEALDKGAQPLKEFMLKQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELK
Sbjct: 121 IQMMEALDKGAQPLKEFMLKQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELK 180

Query: 202 TAFQIGFAIFLPFLIIDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLA 261
           TAFQIGFAIFLPFLIIDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLA
Sbjct: 181 TAFQIGFAIFLPFLIIDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLA 240

Query: 262 QSFY 265
           QSFY
Sbjct: 241 QSFY 244


>gi|300310129|ref|YP_003774221.1| type III secretion HrcR
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  138 bits (347), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 125/207 (60%), Gaps = 9/207 (4%)

Query: 67  LLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVF 126
           +LL  ++ +P  ++  T F +I +VL +LR A+G Q  PPT  + G++L L+ F+M+P  
Sbjct: 13  VLLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTV 72

Query: 127 DRI-----YTDAYQPFAENKIQMMEALDKGAQPLKEFMLK----QTRESDLALYVKLSRG 177
             +       D   P A   + ++E       PL++FMLK    + RE  LA   KL   
Sbjct: 73  QEVGKRAMAVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQREMFLASAKKLWPK 132

Query: 178 PALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVASILMSMGMMMMSPAL 237
            A +  +     +L+PAFV SEL+T ++IGF I++PF++ID++++++LM++GM  +SP  
Sbjct: 133 EAAKDAQPTDALILIPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQT 192

Query: 238 VSLPFKLMLFVLVDGWQLLIGSLAQSF 264
           +++P KL+LF LV GW  L+ +LA S+
Sbjct: 193 ITIPLKLLLFTLVGGWAKLLNALAMSY 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 681,152
Number of extensions: 23972
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)