BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0057.p (661 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 320 2e-88 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 124 2e-29 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 111 2e-25 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 94 5e-20 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 93 6e-20 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 320 bits (821), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 155/155 (100%), Positives = 155/155 (100%) Query: 1 MRTPLLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDK 60 MRTPLLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDK Sbjct: 1 MRTPLLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDK 60 Query: 61 PSAGSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPL 120 PSAGSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPL Sbjct: 61 PSAGSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPL 120 Query: 121 QRRQRAGELLARLGLAERSHHKPGQLSGGQQQRVS 155 QRRQRAGELLARLGLAERSHHKPGQLSGGQQQRVS Sbjct: 121 QRRQRAGELLARLGLAERSHHKPGQLSGGQQQRVS 155 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 66/154 (42%), Positives = 102/154 (66%) Query: 2 RTPLLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKP 61 R +L RGL + F G + VL +V++D++ GE VAIVGASGSGKSTL+++LG LD P Sbjct: 8 RQAVLAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTP 67 Query: 62 SAGSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQ 121 S+G+ + G++ L E LR + GF++Q +HLL + A NV +P + ++ Sbjct: 68 SSGTVSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRAD 127 Query: 122 RRQRAGELLARLGLAERSHHKPGQLSGGQQQRVS 155 +++A E+L ++GLA+R H PG+LSGG++QRV+ Sbjct: 128 AQEQAREMLGKVGLAQRVTHVPGELSGGERQRVA 161 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 4/140 (2%) Query: 16 PAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSYLVAGRETGK 75 PAG ++T+L+ ++ + AG +AIVGASGSGKSTL+ +L LD PS GS + G + Sbjct: 30 PAG--RLTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYA 87 Query: 76 LDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQRAGELLARLGL 135 LD D A LR+ GF+FQ + LL L+A NV +P G + R++A E+L R+GL Sbjct: 88 LDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRG--DARAREKATEMLGRVGL 145 Query: 136 AERSHHKPGQLSGGQQQRVS 155 R H P LSGG+QQRV+ Sbjct: 146 GSRLKHSPKYLSGGEQQRVA 165 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 6 LQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGS 65 + LRG+ + + + + L D++L+I G + I+G SG+GKS+L+ + L++P++G Sbjct: 39 VALRGVGKTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGR 98 Query: 66 YLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQR 125 V + LD +L LRR G IFQ ++LL+ N+ +P AG+ Q QR Sbjct: 99 VEVDDVDLATLDETQLVALRR-RIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQR 157 Query: 126 AGELLARLGLAERSHHKPGQLSGGQQQRV 154 ELLA +GL +++ P +LSGGQ+QRV Sbjct: 158 VHELLALVGLQDKADSYPRRLSGGQKQRV 186 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 118/254 (46%), Gaps = 23/254 (9%) Query: 3 TPLLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPS 62 PL+ + +++ F GD + VL ++LD+ GE++AI+G SGSGKSTL+ + L+ Sbjct: 1 MPLIAIDNVKKRF--GDNE--VLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESID 56 Query: 63 AGSYLVAGRETGKLDADELAQLR--REHFGFIFQRYHLLSDLDATANVEV-PSVYAGLEP 119 G+ VAG KL A EL +LR R G IFQ+++L L NV + P + G+ Sbjct: 57 EGNISVAG---AKLGASEL-ELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSE 112 Query: 120 LQRRQRAGELLARLGLAERSHHKPGQLSGGQQQRVSRRARADERRRRHPGRRAHRCAGQP 179 + + A L ++GL + P QLSGGQQQRV+ ARA + A P Sbjct: 113 AEAMKTAKANLEKVGLGHKFDAYPDQLSGGQQQRVA-IARALSMSPQALLCDEITSALDP 171 Query: 180 QRAGSHQDP------QGTACRGPHHHHRHARHAGGQPRPAHHRDQGRRHHRRPPQR--GD 231 + +G H R AR + H QG+ H PP+ G+ Sbjct: 172 ELVNEVLTVMRGLAKEGMTLLMVTHEMRFAREVCNRLVFMH---QGKVHEIGPPEELFGN 228 Query: 232 RPCPRCPRYHGQQQ 245 P ++ G Q Sbjct: 229 PKTPELQQFIGMTQ 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.141 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,991,941 Number of extensions: 79116 Number of successful extensions: 492 Number of sequences better than 1.0e-08: 66 Number of HSP's gapped: 455 Number of HSP's successfully gapped: 67 Length of query: 661 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 570 Effective length of database: 1,188,985 Effective search space: 677721450 Effective search space used: 677721450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)