BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0051.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring pro...   397   e-112
gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring pro...    85   4e-18

>gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  397 bits (1021), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/219 (96%), Positives = 217/219 (99%)

Query: 1   MKSMLKWVTLAGILAVAGCTTVPDSIVEGPKSARPQPASYAPPTSGAIFQGAVYRPLLED 60
           MKSMLKWVTLAGILAVAGCTTVPDSIV GPKSARPQPASYAPPTSGAIFQGAVYRPLLED
Sbjct: 1   MKSMLKWVTLAGILAVAGCTTVPDSIVAGPKSARPQPASYAPPTSGAIFQGAVYRPLLED 60

Query: 61  RRARLVGDTLTIVINERTSAGKSAASSASKTGAVNSPAPTFFGTSIKELSASGSSSAKFD 120
           RRARLVGDTLTIVINE+TSAGKSAASSASKTGAVNSP PTFFGTSIKEL+A+GSSSAKFD
Sbjct: 61  RRARLVGDTLTIVINEKTSAGKSAASSASKTGAVNSPVPTFFGTSIKELTANGSSSAKFD 120

Query: 121 DKGATTSSNTFTGTIGVTVIEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGN 180
           DKGATTSSNTFTGTIGVTV+EVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGN
Sbjct: 121 DKGATTSSNTFTGTIGVTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGN 180

Query: 181 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219
           TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFS+SPF
Sbjct: 181 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSISPF 219


>gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 85.1 bits (209), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 111/201 (55%), Gaps = 15/201 (7%)

Query: 4   MLKWVTLAGILAVAG----CTTVPDSIVEGPKSARPQPASYAPPTSGAIFQGAVYRPLLE 59
           ML    LAG   +A     C + P  +V GP S RP         +GAIF+ +  + L E
Sbjct: 1   MLIQTRLAGACTLAALLSACNS-PAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQ-LFE 58

Query: 60  DRRARLVGDTLTIVINERTSAGKSAASSASKTGAVNSPAPT-------FFGTSIKELSAS 112
           +  A  VGD + I I+E  S+   AA++ S+  ++    P         F T + + + S
Sbjct: 59  EPTAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLF-TQLYDANYS 117

Query: 113 GSSSAKFDDKGATTSSNTFTGTIGVTVIEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVS 172
            S +  F   G ++++NT +GT+ V+++EVLPN NLVVAGEK++ ++  +  +RFSG V 
Sbjct: 118 ASGNNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVR 177

Query: 173 PDNIQTGNTVSSTLVADAKVE 193
             +I+ G  V+S+ VADA++E
Sbjct: 178 TRDIR-GGIVASSNVADARLE 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 619,095
Number of extensions: 23326
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)