BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0037.p
         (394 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB tra...   796   0.0  
gi|300310132|ref|YP_003774224.1| type III secretion HrcU transme...   159   3e-40

>gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/391 (100%), Positives = 391/391 (100%)

Query: 4   MAEDSDMERTEPATGKRIERAREQGDVPRSRELATCLVLLVGGSCVWMFSGPVVTSLDRI 63
           MAEDSDMERTEPATGKRIERAREQGDVPRSRELATCLVLLVGGSCVWMFSGPVVTSLDRI
Sbjct: 1   MAEDSDMERTEPATGKRIERAREQGDVPRSRELATCLVLLVGGSCVWMFSGPVVTSLDRI 60

Query: 64  MVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLFNVSS 123
           MVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLFNVSS
Sbjct: 61  MVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLFNVSS 120

Query: 124 LAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGVESLK 183
           LAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGVESLK
Sbjct: 121 LAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGVESLK 180

Query: 184 TAGAHAAQLLWISFITMVSALIFIAVLDVPYQLWNYGRKLRMTREEVKQEHKESEGDPHI 243
           TAGAHAAQLLWISFITMVSALIFIAVLDVPYQLWNYGRKLRMTREEVKQEHKESEGDPHI
Sbjct: 181 TAGAHAAQLLWISFITMVSALIFIAVLDVPYQLWNYGRKLRMTREEVKQEHKESEGDPHI 240

Query: 244 KGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKVVAKGSDEIAAK 303
           KGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKVVAKGSDEIAAK
Sbjct: 241 KGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKVVAKGSDEIAAK 300

Query: 304 IRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLRTYGQFGGTR 363
           IRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLRTYGQFGGTR
Sbjct: 301 IRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLRTYGQFGGTR 360

Query: 364 PVEPTGLEVPKELDPLTAPKKPRGSQRRTRQ 394
           PVEPTGLEVPKELDPLTAPKKPRGSQRRTRQ
Sbjct: 361 PVEPTGLEVPKELDPLTAPKKPRGSQRRTRQ 391


>gi|300310132|ref|YP_003774224.1| type III secretion HrcU
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 188/393 (47%), Gaps = 36/393 (9%)

Query: 8   SDMERTEPATGKRIERAREQGDVPRSRELATCLVLLVGGSCVWMFSGPVVTSLDRIMVAM 67
           SD +  EP T K+IE A+++G +  SR+LA  + L+               ++    +A 
Sbjct: 2   SDDKNEEP-TDKKIEDAKKKGQIAVSRDLARLVTLV---------------AVMEAALAA 45

Query: 68  MSLERAAIYD-------------PVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTL 114
            SL R A+++                + N ++A  + +A+A   +  +  LAA+      
Sbjct: 46  DSLWRGAVFNLMEGGVLGVGQDFQTAMNNQLTAALILLAVAFFAVLVICPLAAVVGHWGQ 105

Query: 115 GGWLFNVSSLAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAV 174
            G L    +L PK  KLNP++G   +FS   LVEL   V K  L+  + +  I SQL A+
Sbjct: 106 FGMLIATEALEPKLDKLNPVNGIKQIFSKKKLVELFITVGKAALIAGMMYSAIHSQLGAI 165

Query: 175 MGLGVESLKTAGAHAAQLLWISFITMVSALIFIAVLDVPYQLWNYGRKLRMTREEVKQEH 234
             L     K        LL   F  ++   + + V+D   Q + + + L M +EE+K+E 
Sbjct: 166 FTLAGGEPKDVYEAFVTLLRNIFHLIIVVCLVLGVIDYAVQKYFHKKDLMMDQEEIKREF 225

Query: 235 KESEGDPHIKGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKVVA 294
           KESEGDP +KG+ + + R  A     A+   A+ VV NPTH+AVA+ Y   +   P V+A
Sbjct: 226 KESEGDPMVKGQRKQLARQWANEAPAAKTEKANAVVVNPTHFAVAMFYDADEAMVPLVLA 285

Query: 295 KGSDEIAAKIRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLR 354
           KG DEIA  +   A    +P++    LAR L+   +    +P + Y AVA+V A V +L 
Sbjct: 286 KGRDEIAQAMIARAHACGIPVIRHVWLARTLYATCQDDMPVPRSSYQAVAQVYAVVHELV 345

Query: 355 TYGQFGGTRPVEPTGLEVPKELDPLTAPKKPRG 387
             G+    R VE   L  P E D L     P+G
Sbjct: 346 ASGEV--QREVELESLGEPPERDTL-----PKG 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,056,736
Number of extensions: 37485
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,207,925
Effective search space: 370832975
Effective search space used: 370832975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)