BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0031.p (534 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis pro... 1082 0.0 gi|300311974|ref|YP_003776066.1| methyl-accepting chemotaxis I p... 104 2e-23 gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 103 4e-23 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 100 4e-22 gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sen... 98 1e-21 >gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/534 (99%), Positives = 533/534 (99%) Query: 1 VGPWLAGLLVGSLAGLALDALGAGQWLPGPVIHALGVLLGMAVFAPLRQRSQPQGNQLVD 60 VGPWLAGLLVGSLAGLALDALGAGQWLPGPVIHALGVLLGMAVFAPLRQRSQPQGNQLVD Sbjct: 20 VGPWLAGLLVGSLAGLALDALGAGQWLPGPVIHALGVLLGMAVFAPLRQRSQPQGNQLVD 79 Query: 61 RISGEIDHIMIGAAETSFFVDTIKTKLSKDVDAANRIAASAEQNAATTQQIAANAERASS 120 RISGEIDHIMIGAAETSFFVDTIKTKLSKDVDAANRIAASAEQNAATTQQIAANAERASS Sbjct: 80 RISGEIDHIMIGAAETSFFVDTIKTKLSKDVDAANRIAASAEQNAATTQQIAANAERASS 139 Query: 121 IASEVRTESVSGRSEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISEIAAR 180 IASEVRTESVSGRSEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISEIAAR Sbjct: 140 IASEVRTESVSGRSEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISEIAAR 199 Query: 181 TNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATDDIGTMVRAITEEAERAASG 240 TNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATDDIGTMVRAITEEAERAASG Sbjct: 200 TNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATDDIGTMVRAITEEAERAASG 259 Query: 241 MNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIAVASREHVQTTQEIADAITDI 300 MNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIAVASREHVQTTQEIADAITDI Sbjct: 260 MNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIAVASREHVQTTQEIADAITDI 319 Query: 301 RNGMLQTDTELPRVAASAMQLSERAEAVFEAIVEGGARGGHDDIRIAAADAAAAVGKLFE 360 RNGMLQTDTELPRVAASAMQLSERAEAVFEAIVEGGARGGHDDIRIAAADAAAAVGKLFE Sbjct: 320 RNGMLQTDTELPRVAASAMQLSERAEAVFEAIVEGGARGGHDDIRIAAADAAAAVGKLFE 379 Query: 361 ESIRAGVITEAALFDRHYKPIPNTSPQKHSSQFDAFTDRVLPAIQEALLERMPQLAYAGA 420 ESIRAGVITEAALFDRHYKPIPNTSPQKHSSQFDAFTDRVLPAIQEALLERMPQLAYAGA Sbjct: 380 ESIRAGVITEAALFDRHYKPIPNTSPQKHSSQFDAFTDRVLPAIQEALLERMPQLAYAGA 439 Query: 421 VDNNGYFPTHNKKFSQPLTGNYDVDLVNNRTKRIFSDRTGKRCGSNTKPFLLQTYKRDTG 480 VDNNGYFPTHNKKFSQPLTGNYDVDLVNNRTKRIFSDRTGKRCGSNTKPFLLQTYKRDTG Sbjct: 440 VDNNGYFPTHNKKFSQPLTGNYDVDLVNNRTKRIFSDRTGKRCGSNTKPFLLQTYKRDTG 499 Query: 481 EVMHDLSVPIHVHGKHWGGFRVGYRSSHAHAPAVATTPAPVPSPAKVSVRIARG 534 EVMHDLSVPIHVHGKHWGGFRVGYRSSHA APAVATTPAPVPSPAKVSVRIARG Sbjct: 500 EVMHDLSVPIHVHGKHWGGFRVGYRSSHAPAPAVATTPAPVPSPAKVSVRIARG 553 >gi|300311974|ref|YP_003776066.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 121/235 (51%), Gaps = 21/235 (8%) Query: 98 AASAEQNAATTQQIAANAERASSIASEVRTESVSGRSEVDRGLQQIGQARTDALSASSMM 157 A+S EQ A+ ++IAA A++++ A + G GQ D + M Sbjct: 294 ASSLEQTASAMEEIAATAQQSAEFARSANAQVAQASGVAQHG----GQVMGDVVQT---M 346 Query: 158 AQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTK 217 ++ E SRRI I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQR+ Sbjct: 347 GRIDESSRRIADIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA 406 Query: 218 EATDDIGTMVRAITEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIE 277 A +I ++ A + S + + + QNVE V G I Sbjct: 407 TAAREIKELINASLAAVDGGMSLVGDAGKIIQDVVQNVELVRGT--------------IS 452 Query: 278 EIAVASREHVQTTQEIADAITDIRNGMLQTDTELPRVAASAMQLSERAEAVFEAI 332 EI+VA+ E + E+ AI+++ Q + + + A+ MQL+++A + E I Sbjct: 453 EISVAAEEQSRGIAEVNIAISNMEQTTQQNASLVEQTTAATMQLNQQAVLLAEVI 507 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 108/195 (55%), Gaps = 14/195 (7%) Query: 98 AASAEQNAATTQQIAANAERASSIASEVRTESVSGRSEVDRGLQQIGQARTDALSASSMM 157 A+S E+ +T +Q A NA AS +A+ +V G V R + +G Sbjct: 347 ASSMEELTSTVKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGA------------ 394 Query: 158 AQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTK 217 + E S+RI I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQR+ Sbjct: 395 --INESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 452 Query: 218 EATDDIGTMVRAITEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIE 277 A +I T++ + E ++ +N S + E ++V++V ++ I ++ + IE Sbjct: 453 AAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIITGISNASQEQASGIE 512 Query: 278 EIAVASREHVQTTQE 292 +I A + Q TQ+ Sbjct: 513 QIQQAINQMDQVTQQ 527 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 103/195 (52%), Gaps = 14/195 (7%) Query: 98 AASAEQNAATTQQIAANAERASSIASEVRTESVSGRSEVDRGLQQIGQARTDALSASSMM 157 A+S E+ +T +Q + NA +A+++A T + G V R + M Sbjct: 305 ASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVID--------------TM 350 Query: 158 AQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTK 217 ++ + S ++ I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQR+ Sbjct: 351 NEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 410 Query: 218 EATDDIGTMVRAITEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIE 277 A D+ ++ E ER + + E Q V V ++N I ++S+ IE Sbjct: 411 AAAKDVKDLITLSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIE 470 Query: 278 EIAVASREHVQTTQE 292 ++ A + Q TQ+ Sbjct: 471 QVNQALSQMDQVTQQ 485 >gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 28/209 (13%) Query: 98 AASAEQNAATTQQIAANAERASSIASEVRTESVSGRSEVDRGLQQIGQARTDALSASSMM 157 A++ E+ +T +Q A +A +A+ + + +V G + VD+ +Q +G+ RT Sbjct: 321 ASAMEELTSTVRQNADHAHQANELVATSSRLAVQGGAVVDQVVQTMGEIRTG-------- 372 Query: 158 AQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTK 217 S RI IT VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQR+ Sbjct: 373 ------SARIADITGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 426 Query: 218 EATDDIGTMVRAITEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIE 277 A +I ++ ++ A ++ Q + +H +++S+ R A+ + Sbjct: 427 AAAREIKALIEGSVQQVATGAELVD----------QAGQTMHEIVDSVARVAT----LMS 472 Query: 278 EIAVASREHVQTTQEIADAITDIRNGMLQ 306 EIAVASRE + EI A+T + G Q Sbjct: 473 EIAVASREQSRGIDEINHAVTQMDEGTQQ 501 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,253,266 Number of extensions: 46248 Number of successful extensions: 453 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 362 Number of HSP's successfully gapped: 70 Length of query: 534 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 444 Effective length of database: 1,193,720 Effective search space: 530011680 Effective search space used: 530011680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)