BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0028.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311333|ref|YP_003775425.1| Co/Zn/Cd efflux system componen...   510   e-146

>gi|300311333|ref|YP_003775425.1| Co/Zn/Cd efflux system component
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  510 bits (1313), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 310/329 (94%), Positives = 310/329 (94%), Gaps = 3/329 (0%)

Query: 1   MQSTSPFRHEHVYLGANHDRNTRRTLWVVVLTAVMMVAEIAAGYLTGSMALLADGFHMAT 60
           MQSTSPFRHEHVYLGANHDRNTRRTLWVVVLTAVMMVAEIAAGYLTGSMALLADGFHMAT
Sbjct: 1   MQSTSPFRHEHVYLGANHDRNTRRTLWVVVLTAVMMVAEIAAGYLTGSMALLADGFHMAT 60

Query: 61  HTGALAIAAGAYVFARRHAHDQRFSFGTGKVGDLAGFASALVLAVIAIGIGGESLWRLAS 120
           HTGALAIAAGAYVFARRHAHDQRFSFGTGKVGDLAGFASALVLAVIAIGIGG SLWRLAS
Sbjct: 61  HTGALAIAAGAYVFARRHAHDQRFSFGTGKVGDLAGFASALVLAVIAIGIGGGSLWRLAS 120

Query: 121 PSPVEFGEAIVIAVIGLMVNITSALLLME---GHHHDHAHHDAHAHHAHHAHHSDHAHDK 177
           PSPVEFGEAIVIAVIGLMVNI SALLLME     H  H  H  HAHH HH HHSDH H K
Sbjct: 121 PSPVEFGEAIVIAVIGLMVNIASALLLMEGHHHDHAHHDAHAHHAHHTHHTHHSDHGHGK 180

Query: 178 GHPAHHHAHAHDNNLRSAYLHVVADALTSVLAIAALLAGLYLGWTWLDPAMGVVGAVVIA 237
            HP HHHAHAHDNNLRSAYLHVVADALTSVLAIAALLAGLYLGWTWLDPAMGVVGAVVIA
Sbjct: 181 DHPPHHHAHAHDNNLRSAYLHVVADALTSVLAIAALLAGLYLGWTWLDPAMGVVGAVVIA 240

Query: 238 RWSYSLLRASATVLLDVTDEQVATRIRQALADEPVQIDDLHVWRIGPTARAAIVSLSGPA 297
           RWSYSLLRASATVLLDVTDEQVATRIRQALADEPVQIDDLHVWRIGPTARAAIVSLSGPA
Sbjct: 241 RWSYSLLRASATVLLDVTDEQVATRIRQALADEPVQIDDLHVWRIGPTARAAIVSLSGPA 300

Query: 298 EQEETPLRQKLAALEQLQHLSLEYRRLPA 326
           EQEETPLRQKLAALEQLQHLSLEYRRLPA
Sbjct: 301 EQEETPLRQKLAALEQLQHLSLEYRRLPA 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 880,226
Number of extensions: 34081
Number of successful extensions: 229
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)