BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0018.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311326|ref|YP_003775418.1| serine O-acetyltransferase [Her...   377   e-106
gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Her...    70   1e-13

>gi|300311326|ref|YP_003775418.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score =  377 bits (967), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/188 (99%), Positives = 187/188 (99%)

Query: 1   MTRDPDWEADLRRYDMRRPFLKEQSIWAIWVYRWGRRIEARPAGLSRKIANLFYWLAFRL 60
           MTRDPDWEADLRRYDMRRPFLKEQSIWAIWVYRWGRRIEARPAGLSRKIANLFYWLAFRL
Sbjct: 1   MTRDPDWEADLRRYDMRRPFLKEQSIWAIWVYRWGRRIEARPAGLSRKIANLFYWLAFRL 60

Query: 61  VETVFGISLPRTARIGPGLRIWHFGNIFLHGDVVIGAGCTLRQGVTIGNRREGGPVPVLG 120
           VETVFGISLPRTARIGPGLRIWHFGNIFLHGDVVIGAGCTLRQGVTIGNRREGGPVPVLG
Sbjct: 61  VETVFGISLPRTARIGPGLRIWHFGNIFLHGDVVIGAGCTLRQGVTIGNRREGGPVPVLG 120

Query: 121 DNVELGAYAQVLGAVHLGDGCKVGAMSVVLDDVPTGATAVGAPARVIARTSAGSLASASS 180
           DNVELGAYAQVLGAVHLGDGCKVGAMSVVLDDVP GATAVGAPARVIARTSAGSLASASS
Sbjct: 121 DNVELGAYAQVLGAVHLGDGCKVGAMSVVLDDVPPGATAVGAPARVIARTSAGSLASASS 180

Query: 181 ELLQKDMT 188
           ELLQKDMT
Sbjct: 181 ELLQKDMT 188


>gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score = 69.7 bits (169), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 12/150 (8%)

Query: 26  IWAIWVYRWGRRI-EARPAGLSRKIANLFYWLAFRLVETVFGISLPRTARIGPGLRIWHF 84
           + A+ ++RW +   +A+   L R I+ L   L         GI +   A IG  + I H 
Sbjct: 32  LHALILHRWAKACWQAQLKWLGRFISQLGRMLT--------GIEIHPGATIGRRVFIDHG 83

Query: 85  GNIFLHGDVVIGAGCTLRQGVTIGNR---REGGPVPVLGDNVELGAYAQVLGAVHLGDGC 141
             + +    ++G   T+ QGVT+G     +     P LG  V +GA A+VLG   +GDG 
Sbjct: 84  MGVVIGETAIVGDDSTIYQGVTLGGTSLVKGAKRHPTLGRGVIIGAGAKVLGGFTVGDGA 143

Query: 142 KVGAMSVVLDDVPTGATAVGAPARVIARTS 171
           KVG+ +VV  +VP G TAVG PAR+I R +
Sbjct: 144 KVGSNAVVTKEVPAGTTAVGNPARIIERNT 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 647,414
Number of extensions: 29457
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)