BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0017.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311319|ref|YP_003775411.1| glycosyl transferase [Herbaspir...   160   2e-40

>gi|300311319|ref|YP_003775411.1| glycosyl transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 159/322 (49%), Gaps = 26/322 (8%)

Query: 6   MNIAYLILAHNNPRLLDTLMAQLDSDQAQADAPAHPTAPSKAHFFLHIDRKADIAPFLGL 65
           MNIAYL+L HN P     ++ +LDS               +A FF+H+D K+D A + GL
Sbjct: 1   MNIAYLLLIHNTPHHTARIIDKLDS--------------GRARFFIHLDAKSDAAAYAGL 46

Query: 66  ADRYPHLHFCRDRVDGAWAHFSLVEATLRLMRQAMQTLGTPDRVVLLSGATLPVQPPAYI 125
             +  H+ F   R D  W   S V+A L L+  A+Q  G  DR VL+SG+  P+     I
Sbjct: 47  --QREHVQFTARRHDVRWGEISQVDAILELISSAVQA-GPFDRYVLISGSDYPLFGAEQI 103

Query: 126 ASFFARERGANYMDAFAMPNEEYGKGLGRLEHYWIRRSPPMHRYRWM-LQDFINTQLPRR 184
             FFA      ++++  +P     K + R+  Y    + P+ R  +M L   +  ++P R
Sbjct: 104 EGFFADNAHIEFINS--VPLGSPSKPMSRITTYCPSAADPLPRKLFMKLWWKLGLKVPPR 161

Query: 185 NFRRAFGPLQPAAGSQWWAITGEACRYVLDYVSEHPRFVRFCHHTDCPDEFFFQTILWNS 244
           +    FG L P  GS WWA+T  AC  +LD+    P   RF  ++ CPDE +FQTIL NS
Sbjct: 162 HIAGLFGKLVPHGGSTWWALTHAACTVILDFHRRRPEIYRFLVNSYCPDETYFQTILSNS 221

Query: 245 PFKESLRPTLTYTDWRPGKQSPEAINGDTLAQFAQDVVFNSPHNNSPLPPGEVLFARKFD 304
             K  +R  LTYT W  G+ +PE +  +   +       +   ++     G VLFARKF 
Sbjct: 222 DLKGRIRRNLTYTYWVEGRANPEIMTAEIYQRLKAGGFID---DSRLYGAGPVLFARKFR 278

Query: 305 EQDWPV---IEQLVALLQGKAA 323
           E +  +   I+Q  AL    AA
Sbjct: 279 EGEETLLHTIDQSGALTSASAA 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,070,181
Number of extensions: 44393
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)