BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0012.p
         (197 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine...   382   e-107
gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine...   120   6e-29
gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine...    74   8e-15

>gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  382 bits (980), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MTTGTSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDG 60
           MTTGTSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDG
Sbjct: 1   MTTGTSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDG 60

Query: 61  TSLWWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQL 120
           TSLWWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQL
Sbjct: 61  TSLWWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQL 120

Query: 121 NPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALH 180
           NPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALH
Sbjct: 121 NPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALH 180

Query: 181 GVIGAMMA 188
           GVIGAMMA
Sbjct: 181 GVIGAMMA 188


>gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  120 bits (302), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 99/179 (55%), Gaps = 1/179 (0%)

Query: 10  PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69
           PL GI V+ L   IA PFC+R LA+ GA VIK+E PG GD  R +    +G S  +    
Sbjct: 7   PLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWTN 66

Query: 70  RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129
           R+K+S+TLN+KDE  + I  +L  +ADV+++N  PG      L  + L   +P  I+  +
Sbjct: 67  RSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRLIVCDI 126

Query: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMA 188
           SGYG+ GP RD   +  + +S  G   V+G PD   V+ G SI D  A ++     + A
Sbjct: 127 SGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPD-DVVKAGCSIADIAAGMYAYSNILAA 184


>gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score = 73.9 bits (180), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 6   SKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWW 65
           S+  PL GI+VL+L  ++AGP  +R LA  GA+V++++  G  +P     V+        
Sbjct: 203 SRDRPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVL------- 255

Query: 66  SVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATI 125
                 K+   LN+KD    +  R+L   AD+++  YR   L K  L     ++LNPA I
Sbjct: 256 -----GKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALI 310

Query: 126 MVRLSGYGQTGPLRDLPGFGAIGESMGGI 154
            V L  YG +G  +   GF ++ +   GI
Sbjct: 311 DVSLDAYGWSGAWQCRRGFDSLIQMSTGI 339


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 728,875
Number of extensions: 32013
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 3
Length of query: 197
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 117
Effective length of database: 1,241,070
Effective search space: 145205190
Effective search space used: 145205190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)