BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0001.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase [He...   542   e-155
gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase [He...   417   e-118
gi|300312048|ref|YP_003776140.1| UDP-N-acetyl-D-mannosaminuronat...    59   5e-10

>gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  542 bits (1396), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/283 (92%), Positives = 271/283 (95%)

Query: 2   EEGAAGTEAREVMRELYAPLNRNHERILYMDVKSAEFTKYAANAMLATRISFMNELANLA 61
           ++   G  A+ +M++LYAP NRNHER  +MDV+SAEFTKYAANAMLATRISFMNELANLA
Sbjct: 177 DQSPEGLHAQTLMKKLYAPFNRNHERTYWMDVRSAEFTKYAANAMLATRISFMNELANLA 236

Query: 62  DRLGVDIEHVRKGIGSDPRIGHSFLYAGCGYGGSCFPKDVQALERTARDYDQSLLILRAV 121
           D++G DIE VR GIGSDPRIGHSFLYAGCGYGGSCFPKDVQALERTARDYDQSLLILRAV
Sbjct: 237 DKVGADIESVRHGIGSDPRIGHSFLYAGCGYGGSCFPKDVQALERTARDYDQSLLILRAV 296

Query: 122 EQVNDLQKHVLGKKVVARFGEDLAGKHFALWGLAFKPNTDDMREASSRVLIGELVRRGAT 181
           EQVNDLQKHVLGKKVVARFGEDLAGKHFALWGLAFKPNTDDMREASSRVLIGELVRRGAT
Sbjct: 297 EQVNDLQKHVLGKKVVARFGEDLAGKHFALWGLAFKPNTDDMREASSRVLIGELVRRGAT 356

Query: 182 VAVYDPVAMKEASRVLQLDFADDAALLQRIRFGTSPMDTLQDADALAIVTEWKAFRSPDF 241
           VAVYDPVAMKEASRVLQLDFADDAALLQRIRFGTSPMDTLQDADALAIVTEWKAFRSPDF
Sbjct: 357 VAVYDPVAMKEASRVLQLDFADDAALLQRIRFGTSPMDTLQDADALAIVTEWKAFRSPDF 416

Query: 242 ERVKATLKNPVIFDGRNLFDPQLMADSGIEYYGIGRSLLARGQ 284
           ERVKATLKNPVIFDGRNLFDPQLMADSGIEYYGIGRSLLARGQ
Sbjct: 417 ERVKATLKNPVIFDGRNLFDPQLMADSGIEYYGIGRSLLARGQ 459


>gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score =  417 bits (1073), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/277 (73%), Positives = 227/277 (81%)

Query: 1   VEEGAAGTEAREVMRELYAPLNRNHERILYMDVKSAEFTKYAANAMLATRISFMNELANL 60
           VEEGAAG EAREVMRELYAPLNRNHERILYMDVKSAEFTKYAANAMLATRISFMNELANL
Sbjct: 176 VEEGAAGAEAREVMRELYAPLNRNHERILYMDVKSAEFTKYAANAMLATRISFMNELANL 235

Query: 61  ADRLGVDIEHVRKGIGSDPRIGHSFLYAGCGYGGSCFPKDVQALERTARDYDQSLLILRA 120
           ADRLGVDIEHVRKGIGSDPRIG SFLYAG GYGGSCFPKDVQAL RTA ++ Q L IL +
Sbjct: 236 ADRLGVDIEHVRKGIGSDPRIGFSFLYAGTGYGGSCFPKDVQALARTASEHGQELEILGS 295

Query: 121 VEQVNDLQKHVLGKKVVARFGEDLAGKHFALWGLAFKPNTDDMREASSRVLIGELVRRGA 180
           VE VND QK VL KK+VAR GEDL+GK FA+WGLAFKPNTDDMR A SRV++ EL++RGA
Sbjct: 296 VESVNDKQKQVLLKKIVARLGEDLSGKTFAVWGLAFKPNTDDMRAAPSRVIVRELLQRGA 355

Query: 181 TVAVYDPVAMKEASRVLQLDFADDAALLQRIRFGTSPMDTLQDADALAIVTEWKAFRSPD 240
            V VYDPVAM+EA     LD AD       + +    M+ L+ ADA+ IVTEWK+F+SPD
Sbjct: 356 KVQVYDPVAMEEARHAFALDLADLPGKEADLHYAGGAMEALEGADAVVIVTEWKSFKSPD 415

Query: 241 FERVKATLKNPVIFDGRNLFDPQLMADSGIEYYGIGR 277
           F  VKA LK P++FDGRNLF+P  MA  G+EY+ IGR
Sbjct: 416 FAAVKAALKEPLVFDGRNLFEPVTMARLGVEYHAIGR 452


>gi|300312048|ref|YP_003776140.1| UDP-N-acetyl-D-mannosaminuronate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score = 58.5 bits (140), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 33  VKSAEFTKYAANAMLATRISFMNELANLADRLGVDIEHVRKGIGSDPRIGHSFLYAGCG- 91
           +K AE  K   N      I+ MNEL+ + D++G+D   V +  G+      +FL    G 
Sbjct: 196 IKVAEAAKVIENTQRDLNIALMNELSIIFDKIGIDTLEVLQAAGTK----WNFLPFRPGL 251

Query: 92  YGGSCFPKDVQALERTARDYDQSLLILRAVEQVNDLQKHVLGKKVVARF---GEDLAGKH 148
            GG C   D   L   A        ++ A  ++ND     + +K V      G  + G  
Sbjct: 252 VGGHCIGVDPYYLTHKAEMLGYHPQVILAGRRINDGMAKFVAEKTVKSMIAAGFPIKGSK 311

Query: 149 FALWGLAFKPNTDDMREASSRVLIGELVRRGATVAVYDPVA 189
             + GL FK N  D+R +    ++ EL   G  V V+DPVA
Sbjct: 312 VNVLGLTFKENCPDLRNSKVVDIVTELQSYGVEVHVHDPVA 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 826,748
Number of extensions: 32068
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 3
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)