BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0018.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...   627   0.0  
gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...   249   2e-67

>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  627 bits (1617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/317 (99%), Positives = 315/317 (99%)

Query: 1   MKKLLLALLLSITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSSPSYSQPSATPYR 60
           MKKLLLALLLSITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSSPSYSQPSATPYR
Sbjct: 1   MKKLLLALLLSITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSSPSYSQPSATPYR 60

Query: 61  PSTPAATPQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGAMGGLLGSLLTIALLC 120
           PSTPAAT QSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGAMGGLLGSLLTIALLC
Sbjct: 61  PSTPAATLQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGAMGGLLGSLLTIALLC 120

Query: 121 AAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPALQGNA 180
           AAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPALQGNA
Sbjct: 121 AAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPALQGNA 180

Query: 181 YGAAAQPAQILQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAELR 240
           YGAAAQPAQI QWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAELR
Sbjct: 181 YGAAAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFAELR 240

Query: 241 MQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEIWNLS 300
           MQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEIWNLS
Sbjct: 241 MQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEIWNLS 300

Query: 301 KPLNGSGGWVLAGIQQV 317
           KPLNGSGGWVLAGIQQV
Sbjct: 301 KPLNGSGGWVLAGIQQV 317


>gi|300309983|ref|YP_003774075.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  249 bits (636), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 155/221 (70%), Gaps = 4/221 (1%)

Query: 98  SHFGIGGAMGGLLGSLLTIALLCAAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAA 157
           SHFG+GGA+  ++ ++LT+AL+  A++F++RMF R  EA   +                A
Sbjct: 20  SHFGLGGALASMISTILTVALIALAIMFVVRMFRRKSEA---SQPAPAWAGAAPQAADNA 76

Query: 158 GATPEIGSGLR-DINPPPALQGNAYGAAAQPAQILQWGIPEGFDTAGFVRNAKTYFIRLQ 216
            ATP+IGS L+ D +   A QG   G      Q   +G+P GFDT GFVRNAKTYFIRLQ
Sbjct: 77  SATPQIGSMLKTDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIRLQ 136

Query: 217 AAWDRADVNDIREFTTPEMFAELRMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATV 276
           AAWD+AD+NDIREFTTPEMFAELR+Q+ ERGAA N TDVV LDA++LG+ET+  DYLA+V
Sbjct: 137 AAWDKADINDIREFTTPEMFAELRLQIQERGAASNQTDVVSLDAEVLGVETVGNDYLASV 196

Query: 277 RFQGLIKEAPDVSAEPFAEIWNLSKPLNGSGGWVLAGIQQV 317
           +F G IKE P  S   FAEIWNLSKP  G GGWVLAGIQQ+
Sbjct: 197 KFFGFIKEDPTASPAQFAEIWNLSKPAAGQGGWVLAGIQQI 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 818,942
Number of extensions: 32505
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)