BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0014.p (308 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313187|ref|YP_003777279.1| transcription regulator protein... 605 e-174 gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 164 8e-42 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 162 5e-41 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 155 3e-39 gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 149 3e-37 >gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 605 bits (1560), Expect = e-174, Method: Compositional matrix adjust. Identities = 302/308 (98%), Positives = 303/308 (98%) Query: 1 METMTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVAGLESSLGVRLFHRSTRKLSLTE 60 METMTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVA LESSLGVRLFHRSTRKLSLTE Sbjct: 1 METMTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVARLESSLGVRLFHRSTRKLSLTE 60 Query: 61 AGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPG 120 AGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPG Sbjct: 61 AGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPG 120 Query: 121 IQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAQPPLHS 180 IQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDA PPLHS Sbjct: 121 IQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAHPPLHS 180 Query: 181 PTDLAEHAGILIRSPQTGRVRPFSLRDRSGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 P DLAEHAGILIRSPQTGRVRPFSLRDRSGQQAPVTLQQRMTMSDANAACEVAEAGLGIT Sbjct: 181 PADLAEHAGILIRSPQTGRVRPFSLRDRSGQQAPVTLQQRMTMSDANAACEVAEAGLGIT 240 Query: 241 LVSMPHALLYLERGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300 LV+MPHAL YLE GTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL Sbjct: 241 LVAMPHALPYLEGGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300 Query: 301 AERFSAQR 308 AERFSAQR Sbjct: 301 AERFSAQR 308 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 164 bits (415), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 152/299 (50%), Gaps = 7/299 (2%) Query: 1 METMTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVAGLESSLGVRLFHRSTRKLSLTE 60 M + I FV AGSF+AA R+L + + + + LE+++GVRL RSTR+L++T Sbjct: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 Query: 61 AGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPG 120 AG F + GL+ I A A+L + G+PAG+L+V+ F + + + EF+ YP Sbjct: 61 AGREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 Query: 121 IQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAQPPLHS 180 +Q ++ + DLI+EG D A GG +VAR+L +H L+ASP YL+ Q S Sbjct: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQS 180 Query: 181 PTDLAEHAGILIRSPQTGRVRPFSLRDRSGQQAP--VTLQQRMTMSDANAACEVAEAGLG 238 TDL HA + T + ++ G P V + R+ ++ A A AGLG Sbjct: 181 LTDLTAHACL-----ATSQAPQHTVWKLEGPHGPESVKVTPRLCVNTAQGQLRAARAGLG 235 Query: 239 ITLVSMPHALLYLERGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRR 297 I L+ A L GTLV +LPD+ DT + R LP+ ++F + R Sbjct: 236 IALLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLER 294 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 162 bits (409), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 107/298 (35%), Positives = 158/298 (53%), Gaps = 9/298 (3%) Query: 1 METMTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVAGLESSLGVRLFHRSTRKLSLTE 60 M + IECF+A A GSF AA LG++ AAV + V LE+ LG RL R+TR+LSLTE Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 AGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPG 120 AG +L+ + A+ A L+S +P G L+++ FG ++ PL FL R+P Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 IQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAQPPLHS 180 I D +R VD+I EG+D AI +V R+L + ASPAYLDA Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAH 180 Query: 181 PTDLAEHAGILIRSPQTGRVRPFSLRDRSGQQAPVTLQ--QRMTMSDANAACEVAEAGLG 238 P +LA+H I Q+ F +G + PV+++ R+ +++ ++ + A G+G Sbjct: 181 PHELAQHQTISYSYNQSKDEWQF-----NGPEGPVSVRVSSRLHVNNGDSCVQAALGGIG 235 Query: 239 ITLVSMPHALLYLERGTLVRVLPDWYV-DTGMLSLYFTAARLLPAKTRVFVDFVVEHF 295 IT YL G LV +L D+ + G+ ++Y + A LPAK R +DF+ E F Sbjct: 236 ITRQPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAH-LPAKMRAMLDFLTEAF 292 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 155 bits (393), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 147/289 (50%), Gaps = 1/289 (0%) Query: 4 MTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVAGLESSLGVRLFHRSTRKLSLTEAGE 63 + SIE F AA GSF+AAA LGLT A+V ++++ LES LGVRLF R+TR++ LT GE Sbjct: 9 LGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTREGE 68 Query: 64 RFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQP 123 + + L+ I A L P+G L++S+GT + ++PLL F YP I+ Sbjct: 69 LYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQAYPQIEV 128 Query: 124 DWHFENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAQPPLHSPTD 183 + NR VD + EG+D AI G ++A L A L A+PAYL + S + Sbjct: 129 ELSIANRVVDFVEEGYDLAIRLGVPPDSRLIAHTLEEATLGLFAAPAYLARRGQPRSIAE 188 Query: 184 LAEHAGILIRSPQTGRVRPFSLRDRSGQQAPVTLQQRMTMSDANAAC-EVAEAGLGITLV 242 L +H I P +GR P+ +D G+ + R + D C A AG G+ + Sbjct: 189 LEQHDCIQFILPSSGRAMPWIFKDAQGRDMDFHFKSRQRIHDDVLGCVNWAIAGGGLFQI 248 Query: 243 SMPHALLYLERGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFV 291 A + RG LV VL T S+ + R L A+ R FV+F+ Sbjct: 249 YHFIADAAVRRGELVEVLQQAGYRTRRFSILYPHNRHLSARVRAFVEFL 297 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 1 METMTSIECFVAAAHAGSFSAAARQLGLTSAAVGKNVAGLESSLGVRLFHRSTRKLSLTE 60 M+T+ ++ F AGSF+ AA+Q+GLT+A V + VA LE L RL +R+TR+++LTE Sbjct: 2 MDTLQNMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 61 Query: 61 AGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPG 120 AGER+L + + A A ++A +P+G L++ T FG++Y++P + + RYP Sbjct: 62 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 121 Query: 121 IQPDWHFENRPVDLISEGFDAAIAGGTEL-SPGVVARELAPAHRVLLASPAYLDAQPPLH 179 + + R D++ EG+D ++ EL G++ R+L +L ASPAYLD Sbjct: 122 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQ 181 Query: 180 SPTDLAEHAGILIRSPQTGRVRPFSLRDRSGQQ--APVTLQQRMTMSDANAACEVAEAGL 237 P DL HA + + SP + P G + V ++ ++ A A G+ Sbjct: 182 QPADLLNHACLQLVSP----ISPLDEWILEGPEGGTVVAVKSNFQVNVAEAMLTAIREGM 237 Query: 238 GITLVSMPHALLYLERGTLVRVLPDWYV-DTGMLSLYFTAARLLPAKTRVFVDFVVEHFR 296 GI ++ + A+ L GT+VRVLP + + G+ +LY + + L AK +VD++ E Sbjct: 238 GIGVLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALY-PSRQYLDAKISTWVDWMHETVD 296 Query: 297 R 297 R Sbjct: 297 R 297 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 980,974 Number of extensions: 45765 Number of successful extensions: 291 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 53 Length of query: 308 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 223 Effective length of database: 1,217,395 Effective search space: 271479085 Effective search space used: 271479085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)