BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0003.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313177|ref|YP_003777269.1| membrane-bound lytic murein tra...   836   0.0  

>gi|300313177|ref|YP_003777269.1| membrane-bound lytic murein
           transglycosylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/410 (99%), Positives = 409/410 (99%)

Query: 37  MNLSPMSLNRFTKLSSLRRLSVPAMAISVAVLLAACQTPPVTTPGVSQPSPRPTAQPGPA 96
           MNLSPMSLNRFTKLSSLRRLSVPAMAISVAVLLAACQT PVTTPGVSQPSPRPTAQPGPA
Sbjct: 1   MNLSPMSLNRFTKLSSLRRLSVPAMAISVAVLLAACQTTPVTTPGVSQPSPRPTAQPGPA 60

Query: 97  MRATSFSQLPGWNNDDLREAWPAVQSSCSVMIRKPEWRAACAAAQQVNGSDLGLLRQYFE 156
           MRATSFSQLPGWNNDDLREAWPAVQSSCSVMIRKPEWRAACAAAQQVNGSDLGLLRQYFE
Sbjct: 61  MRATSFSQLPGWNNDDLREAWPAVQSSCSVMIRKPEWRAACAAAQQVNGSDLGLLRQYFE 120

Query: 157 TYFTPYQLYNQDGTDTGLVTGYYEPLLRGSRRRSGPYQTPLYQAPDDLLTIDMASVYPEL 216
           TYFTPYQLYNQDGTDTGLVTGYYEPLLRGSRRRSGPYQTPLYQAPDDLLTIDMASVYPEL
Sbjct: 121 TYFTPYQLYNQDGTDTGLVTGYYEPLLRGSRRRSGPYQTPLYQAPDDLLTIDMASVYPEL 180

Query: 217 KNLRLRGKVVGRKVLPYPTRAELMQGNALAGKEIVWVDDPVEAFFLQVQGSGRVYLPESR 276
           KNLRLRGKVVGRKV+PYPTRAELMQGNALAGKEIVWVDDPVEAFFLQVQGSGRVYLPESR
Sbjct: 181 KNLRLRGKVVGRKVVPYPTRAELMQGNALAGKEIVWVDDPVEAFFLQVQGSGRVYLPESR 240

Query: 277 ETIRLAYADQNGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYV 336
           ETIRLAYADQNGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYV
Sbjct: 241 ETIRLAYADQNGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYV 300

Query: 337 FFKEEKLPDPSKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFLATTLPNSDRPLQRLVVA 396
           FFKEEKLPDPSKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFLATTLPNSDRPLQRLVVA
Sbjct: 301 FFKEEKLPDPSKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFLATTLPNSDRPLQRLVVA 360

Query: 397 QDTGGAIRGVVRADYFWGFGDEAEDRAGSMKQRGMMWVLLPKGMTPPSGN 446
           QDTGGAIRGVVRADYFWGFGDEAEDRAGSMKQRGMMWVLLPKGMTPPSGN
Sbjct: 361 QDTGGAIRGVVRADYFWGFGDEAEDRAGSMKQRGMMWVLLPKGMTPPSGN 410


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,547,228
Number of extensions: 69936
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)