BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0049.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310261|ref|YP_003774353.1| nitrilase regulator protein [He...   540   e-155
gi|300310271|ref|YP_003774363.1| AraC family transcription regul...   103   2e-23

>gi|300310261|ref|YP_003774353.1| nitrilase regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  540 bits (1391), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60
           MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG
Sbjct: 44  MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 103

Query: 61  DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120
           DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE
Sbjct: 104 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 163

Query: 121 EAGTCEFNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDPQL 180
           EAGTCEFNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDPQL
Sbjct: 164 EAGTCEFNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDPQL 223

Query: 181 NLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDAGF 240
           NLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDAGF
Sbjct: 224 NLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDAGF 283

Query: 241 SDLSHFSRVFRAAFGCTPQSLLSH 264
           SDLSHFSRVFRAAFGCTPQSLLSH
Sbjct: 284 SDLSHFSRVFRAAFGCTPQSLLSH 307


>gi|300310271|ref|YP_003774363.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 350

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 126/258 (48%), Gaps = 19/258 (7%)

Query: 16  SPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSGDMALYDGARPFEFAL 75
           S   H +R    IR NP +  +  F + G   + QDG+++ +  GD ++ D  RP+    
Sbjct: 61  SKAQHIQRRGEEIRRNPVEYCFANFQLEGSCVVRQDGQESMVLPGDFSIVDSTRPYFLDY 120

Query: 76  -GPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRP-GVMALR--SMLEEAGTCEFNDAE 131
            G   +   R+PR+ ++SR       TA+ +D +   G++A R    LE+       D  
Sbjct: 121 QGDWHVLSFRIPREQVISRLASPYKATARRVDGKAGMGLVASRFARSLEQVDL----DMG 176

Query: 132 SAVR--YSAALLDVLALSLAAPGARTTAAEKNDLYKR------VLAYLRENYTDPQLNLH 183
           S V+   SAAL  ++A++L   GA   A E++ L  R      V  Y+R++  +P L   
Sbjct: 177 SGVQDCLSAALNSIIAIAL---GATLEAQERDRLPVREAIRLAVETYIRDHLEEPHLGPD 233

Query: 184 VLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDAGFSDL 243
           +LA+   VS RTL   F +   +   ++R +RLQ S R L       V   AL  GFSD 
Sbjct: 234 MLASRFKVSRRTLYSLFEEAPLSVSSLIRELRLQRSARDLLSPGHPGVLAVALRWGFSDA 293

Query: 244 SHFSRVFRAAFGCTPQSL 261
           SHFSR+F+  FG  P+  
Sbjct: 294 SHFSRLFKRRFGVCPREF 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 763,359
Number of extensions: 28801
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)