BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0040.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310272|ref|YP_003774364.1| 2-isopropylmalate synthase [Her...   291   2e-80
gi|300312728|ref|YP_003776820.1| 2-isopropylmalate synthase [Her...   184   4e-48

>gi|300310272|ref|YP_003774364.1| 2-isopropylmalate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 575

 Score =  291 bits (745), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/149 (93%), Positives = 143/149 (95%)

Query: 1   MLTDPSQKYRAIAPVDLPERRWPSRTLRQAPTWLSTDLRDGNQALFEPMNRERKLRLFHE 60
           MLTDPSQKYRAIAPVDLP+RRWPSRTLRQAPTWLSTDLRDGNQALFEPMNRERKLRLFHE
Sbjct: 1   MLTDPSQKYRAIAPVDLPDRRWPSRTLRQAPTWLSTDLRDGNQALFEPMNRERKLRLFHE 60

Query: 61  LVRIGFKEIEVGFPAASRIDFETVRHLIDEHLIPDDVTPMVMTQLRADLITETVKSVAGA 120
           LVRIGFKEIEVGFPAASRIDFETVRHLIDEHLIPDDVTPMVMTQLRADLITETVKSVAGA
Sbjct: 61  LVRIGFKEIEVGFPAASRIDFETVRHLIDEHLIPDDVTPMVMTQLRADLITETVKSVAGA 120

Query: 121 RRVIVHFYNAIAPAWREIVFSSRIASILN 149
           RRVIVHFYNAIAPAWREIVF   +  I+ 
Sbjct: 121 RRVIVHFYNAIAPAWREIVFGMSVPQIIT 149


>gi|300312728|ref|YP_003776820.1| 2-isopropylmalate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 567

 Score =  184 bits (466), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 114/157 (72%)

Query: 1   MLTDPSQKYRAIAPVDLPERRWPSRTLRQAPTWLSTDLRDGNQALFEPMNRERKLRLFHE 60
           ML++P+ KYR    +DLP+R WPS+ +   P W+STDLRDGNQAL EPMN ERKLR F  
Sbjct: 2   MLSNPAAKYRPFPAIDLPDRTWPSKVINTPPIWMSTDLRDGNQALIEPMNAERKLRFFEL 61

Query: 61  LVRIGFKEIEVGFPAASRIDFETVRHLIDEHLIPDDVTPMVMTQLRADLITETVKSVAGA 120
           L++ G KEIEVGFP+AS+ DF+ VR LI E+ IPDDVT +V+TQ R +LI  T++S+ GA
Sbjct: 62  LLKTGLKEIEVGFPSASQTDFDFVRKLIVENRIPDDVTIIVLTQSREELIRRTIESLEGA 121

Query: 121 RRVIVHFYNAIAPAWREIVFSSRIASILNSRVYRARF 157
           ++ IVH YN++APA+R+IVF+     I N  V   R 
Sbjct: 122 KKAIVHLYNSVAPAFRKIVFNMSREEIKNIAVTGTRL 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 527,603
Number of extensions: 19866
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)