BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0038.p (916 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 1884 0.0 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 1130 0.0 gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 375 e-105 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 338 1e-93 gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspiri... 300 3e-82 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 1884 bits (4880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 911/916 (99%), Positives = 913/916 (99%) Query: 1 MDNVLTTLSALADTFVGQEKRILKLDSVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTRD 60 MDNVLTTLSALADTFVGQEKRILKLDSVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTRD Sbjct: 13 MDNVLTTLSALADTFVGQEKRILKLDSVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTRD 72 Query: 61 DIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRK 120 DIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRK Sbjct: 73 DIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRK 132 Query: 121 DARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQYETDWHFVQRLMEEEG 180 DARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQYETDWHFVQRLMEEEG Sbjct: 133 DARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQYETDWHFVQRLMEEEG 192 Query: 181 WYAYHEQKPDGSGHVLVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTR 240 WYAYHEQKPDGSGHVLVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTR Sbjct: 193 WYAYHEQKPDGSGHVLVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTR 252 Query: 241 LATRTDDYKSPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQW 300 LATRTDDYKSPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQW Sbjct: 253 LATRTDDYKSPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQW 312 Query: 301 ESSMKRFTGVSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTAR 360 ESSMKRF GVSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTAR Sbjct: 313 ESSMKRFMGVSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTAR 372 Query: 361 DFPGSLKPQLDAFKASIGRSNDDAGGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMHPQ 420 DFPGSLKPQLDAFKAS+GRSNDDAGGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMHPQ Sbjct: 373 DFPGSLKPQLDAFKASMGRSNDDAGGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMHPQ 432 Query: 421 TAVVVGPQGEEVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVG 480 TAVVVGPQGEEVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVG Sbjct: 433 TAVVVGPQGEEVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVG 492 Query: 481 QELIISFLNGDPDRPVATGRLFNQEQPPQWHTDGRLSGLKSKEFGGNGFNQLVMDDTTSQ 540 QELIISFLNGDPDRPVATGRLFNQEQPPQWHTDGRLSGLKSKEFGGNGFNQLVMDDTTSQ Sbjct: 493 QELIISFLNGDPDRPVATGRLFNQEQPPQWHTDGRLSGLKSKEFGGNGFNQLVMDDTTSQ 552 Query: 541 NRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPG 600 NRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPG Sbjct: 553 NRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPG 612 Query: 601 PQGTQLDASEAASLMKASADLARGLSDSASRAGAEALAQDSLKDFVDATEDKYSGQGQGS 660 PQGTQLDASEA SLMKASADLARGLSDSASRAGAEALAQDSLKDFVDATEDKYSGQGQGS Sbjct: 613 PQGTQLDASEATSLMKASADLARGLSDSASRAGAEALAQDSLKDFVDATEDKYSGQGQGS 672 Query: 661 ANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLF 720 ANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLF Sbjct: 673 ANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLF 732 Query: 721 AQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQI 780 AQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQI Sbjct: 733 AQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQI 792 Query: 781 NSAGITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKSELQPSDMEFRHLTDWGEPLAGA 840 NSAGITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKSELQPSDMEFRHLTDWGEPLAGA Sbjct: 793 NSAGITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKSELQPSDMEFRHLTDWGEPLAGA 852 Query: 841 AYKAILSDGSVRKGTLDAQGIARLSGVPAGASAKVEYNYQPLQASSMVNTELHEDVHELL 900 AYKAILSDGSVRKGTLDAQGIARLSGVPAG SAKVEYNYQPLQASSMVNTELHED+HELL Sbjct: 853 AYKAILSDGSVRKGTLDAQGIARLSGVPAGTSAKVEYNYQPLQASSMVNTELHEDLHELL 912 Query: 901 NWTPKVLGALGKGGKS 916 NWTPKVLGALGKGGKS Sbjct: 913 NWTPKVLGALGKGGKS 928 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 1130 bits (2923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/850 (63%), Positives = 671/850 (78%), Gaps = 9/850 (1%) Query: 16 VGQEKRILKLDSVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTLW 75 + Q +R+L+LDS LGPD+LLPQR+V +ERL GY+ TIDL++T I L++LIAQPVTLW Sbjct: 16 ITQHRRLLQLDSSLGPDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPVTLW 75 Query: 76 LQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDILA 135 ++Q D PLHGYVHTA+RLGSDG+L Q+ ++PWLHFL++RKDARIWQD + +DILA Sbjct: 76 IRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTEDILA 135 Query: 136 DVFDQHAYARGNYRFEIVTPALPRSYCTQYETDWHFVQRLMEEEGWYAYHEQKPDGSGHV 195 DVF+ H ARG+YRF++ P PR YCTQYETDWHFVQRLMEEEGW+A+HEQ+ DGSGHV Sbjct: 136 DVFNNHPQARGHYRFQLERPYTPRPYCTQYETDWHFVQRLMEEEGWFAHHEQREDGSGHV 195 Query: 196 LVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQK 255 LVITDNT L + +AFHGA +DE+++ILHWSASR L+S R+DDYKSPG +K Sbjct: 196 LVITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRTLSSKGWRGRSDDYKSPGMKK 255 Query: 256 QTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFTGVSGART 315 + +E+V+PE+G LP +LE+YEY+G YS+ Q+ G+RQA L+VEQWESSM+R++ VSG R Sbjct: 256 EAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRYSAVSGVRN 315 Query: 316 LAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSLKPQLDAFKA 375 LA GRWF L +HP HR + ++ QF+++A++WF+ENNLPLS A DFPGSLK L AFK Sbjct: 316 LACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLSHQALDFPGSLKGALMAFKE 375 Query: 376 SIGRSNDDA-GGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMHPQTAVVVGPQGEEVFT 434 SI R A N TGHCFNRFEVQRRKLP+R H +PVM PQTA+VVGP EEV+T Sbjct: 376 SIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAHARPVMLPQTAIVVGPASEEVYT 435 Query: 435 DKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVGQELIISFLNGDPDR 494 D L+R+KVQFRWDRINPG+E ASCWVRVSYPNAG+ WG ++VPR+GQE+I+SFLNGDPDR Sbjct: 436 DHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGDPDR 495 Query: 495 PVATGRLFNQEQPPQWHTDGRLSGLKSKEFGGNGFNQLVMDDTTSQNRVHLYSSQSNAQL 554 PV TGRLFN EQ PQWHT+GRLSG+KSKEFGG GFNQ+VMDDT QNR+HLYS+ ++AQL Sbjct: 496 PVVTGRLFNAEQRPQWHTNGRLSGVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQL 555 Query: 555 NLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPGPQGTQLDASEAASL 614 NLG+LVSQ NERR+F+GSGFALSTD YGA+VT KGLY+S+YGRPG QGTQLDA EA Sbjct: 556 NLGHLVSQTGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLDAREATGQ 615 Query: 615 MKASADLARGLSDSASRAGAEALA-QDSLKDFVDATEDKYSGQGQGSANRFKKPLLMMAA 673 +K+ A+L+R LS++A++AGAE LA Q++L+DF+DAT+ Y Q ANRF++ +L+ A+ Sbjct: 616 LKSGANLSRTLSETAAKAGAEPLAGQEALRDFIDATQADYEDPSQAQANRFQQAILLAAS 675 Query: 674 PAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLFAQNAGMKLFAAKG 733 P GIGL T +G H+ E TL+SG DTSIA GKSLLA+V EKISLFA AG+KLF+AKG Sbjct: 676 PDGIGLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAFKAGIKLFSAKG 735 Query: 734 KVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQINSAGITQGTPGKW 793 KVE+QAQSDDL+LIAEKVARLLS SGRVEI AK+EV+I+AGGSFI++N++GITQGT G W Sbjct: 736 KVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITAGGSFIRLNASGITQGTSGAW 795 Query: 794 EAKASLHSMPGPASQNFVMPHVQKSELQPSDMEFRHLTDW---GEPLAGAAYKAILSDGS 850 EAKA H+MPGP + + M + S P D EF + W P+ ++ + DG+ Sbjct: 796 EAKAGTHAMPGPTTLAYEMN--KSSAALPFDEEF--VLRWPYDQSPVKNRRFEIVRGDGT 851 Query: 851 VRKGTLDAQG 860 +G DAQG Sbjct: 852 KVRGVTDAQG 861 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 274/829 (33%), Positives = 419/829 (50%), Gaps = 76/829 (9%) Query: 18 QEKRILKLDSVL--GPDV-LLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTL 74 Q RIL+L + PD LL R+ SE L R Y YT++L+S I L ++ + + + Sbjct: 16 QHNRILQLFFINDDAPDAELLINRLEASEALSRDYVYTLELLSDDAHIPLDAMMGKLLRV 75 Query: 75 WLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDIL 134 L + GYV L SDG +A ++ + PWL FL R + RI+ + + Sbjct: 76 ALTRADGTQRHFTGYVERFAFLRSDGGIAFYEARLVPWLAFLASRHNNRIFHHLSLEGLS 135 Query: 135 ADVFDQH-AYARGNYRFEIVTPALPRSYCTQY-ETDWHFVQRLMEEEGWYAYHEQKPDGS 192 A +F + +AR + + P R+ Q+ E+D + + R E+ GW+ ++E + DG Sbjct: 136 AAIFRAYPMHARWDCQLRHGDPV--RTEMFQFDESDSNLLHRRWEDAGWHYHYEHQADG- 192 Query: 193 GHVLVITDNTDQAKPL-APEQLAFHGAGTQDEVNRILHWSASRGL--ASTRLATRTDDYK 249 H L ++D++ AKP+ Q+ F G E + + WSA R +STRL++ D+K Sbjct: 193 -HQLRLSDDSTYAKPIDGTGQVPFQRHGGAIEEDGMAQWSAVRQFQPSSTRLSSY--DFK 249 Query: 250 SPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFTG 309 + Q + + L + GA+ ++E YEY+G Y +A +DDGDRQ+RLR+E++E++ + F G Sbjct: 250 AARPQ-EVEVPTLNKQGAVL-QVEHYEYAGAYGFANRDDGDRQSRLRMEEFEAAAQVFEG 307 Query: 310 VSGARTLAAGRWFTLTDH---PAHRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSL 366 R L GR F LT H A D +D + ++I+VE NN S Sbjct: 308 TGNCRFLQPGRTFRLTGHFSGSAASHDHDRDPELLIISVEHSATNNY--------LQDSE 359 Query: 367 KPQLDAFKASIGRSNDDAGGNARTGHCFNRFEVQRRKLPYR---SPFDHTKPVMHPQTAV 423 P A NR R+++P+R S + ++ QTA Sbjct: 360 TPPFYA----------------------NRVRCVRKRIPWRPGRSYYSQPTALLGIQTAT 397 Query: 424 VVGPQGEEVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVGQEL 483 VVGP GE + D+ RVKVQF WD+I DE++S W+RV+ +G G V VPR+GQ + Sbjct: 398 VVGPAGENLHVDEYGRVKVQFHWDQIGRNDERSSAWLRVASSWSGGEQGLVSVPRIGQLV 457 Query: 484 IISFLNGDPDRPVATGRLFNQEQPPQWH--TDGRLSGLKSKEFG-------GNGFNQLVM 534 I+ +L G PDRP+ TG + NQ P W + LSG++S+E G ++ Sbjct: 458 IVQWLGGHPDRPIITGSVVNQLNMPPWTLPSQSALSGMRSRELAPRTGNAPGGRSGHVLF 517 Query: 535 DDTTSQNRVHLYSSQSNAQLNLGYLVS-QADNERRNFYGSGFALSTDDYGAVVTQKGLYL 593 DDT + + S ++QL LG++ + R++ G GF L TD +G V +GL L Sbjct: 518 DDTHEAIQTQVRSDAFDSQLALGHITRIERHAGRQDARGEGFELRTDAHGVVRAAQGLLL 577 Query: 594 SSYGRPGPQGTQLDASEAASLMKASADLARGLSDSASRAGAEALAQDSLKDFVDATE--- 650 +S RP D E + + ARG +S S+ E AQD D DA + Sbjct: 578 TSEPRPKAHRHTTDIGETVARLTQ----ARGTVESLSKLAQEHEAQDKNADQYDAAQAIK 633 Query: 651 ---DKYSGQGQGSANRF---KKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIA 704 D G G RF +P L++++P+GI ++ T + SA+ LT+G S+A Sbjct: 634 AQNDAIKGDGAAKGGRFPELTEPHLVLSSPSGIEASSGASTHLASAEHAALTAGSHISLA 693 Query: 705 SGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIH 764 +GKS A+ EK+SL A G KL AA G+VEIQAQ+D ++L+A+KV ++ST + + Sbjct: 694 AGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMELLAQKVVDIISTRDWINLK 753 Query: 765 AKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMP 813 AK + ++ GGS + I + GIT T G A+ H GP + P Sbjct: 754 AKKGIRLNGGGSELVI-AEGITGFTQGAHHVHAADHQTLGPQGRPAEFP 801 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 338 bits (867), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 274/930 (29%), Positives = 442/930 (47%), Gaps = 101/930 (10%) Query: 2 DNVLTTLSALADTFVGQEKRILKLDSVLG---PDVLLPQRMVGSERLGRGYDYTIDLVST 58 D++ ++ L T + Q R++ + + P+ L +R G E + + + ID +S Sbjct: 7 DSLTAAVTELFGTGLSQNARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFDIDALSI 66 Query: 59 RDDIELKKLIAQPVTL-WLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLK 117 D++LK+ I ++L LQ DG A HGY A LG+DG LA +++ + +L FL Sbjct: 67 STDLDLKQFIGAEISLRLLQADGGTRA-WHGYCTQASWLGADGGLARYRLRLESFLAFLD 125 Query: 118 YRKDARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQY-ETDWHFVQRLM 176 R D+ ++QD DI A V + Y + N+ E+ R CTQY ETD+ F++R++ Sbjct: 126 RRHDSFLFQDMTVTDIAAAVLKE--YPQANFSLEVTQTLAKRDICTQYRETDYAFLRRIL 183 Query: 177 EEEGW-----------YAYHEQKPDGSGHVLVITDNTDQAK--PLAPEQLAFHGAGTQDE 223 EG H+Q + H LVI D +A P E + FH + Sbjct: 184 ASEGLNFRFEHEQDDATQQHDQSQPHARHKLVIFDRNAKAPALPGGDEYIRFHRVAAMEA 243 Query: 224 VNRILHWSASRGLASTRLATRT---DDYKSPGDQKQTQERVLPEHGALPGELEVYEYSGP 280 + I ++A R + +A + + SP + E + G LP L VY+ +G Sbjct: 244 SDAITDFAAVRSVRPNGVALASWHPEKLSSPSHE----EGSTLDAGELP-SLPVYDGTGQ 298 Query: 281 YSYAKQDDGDRQARLRVEQWESSMKRFTGVSGARTLAAGRWFTLTDHPAHRGDSKQDSQF 340 +A QD A+L ++ E KRF G AR LAAG FTL H + + ++ F Sbjct: 299 QDFADQDAAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERY---PEGENAF 355 Query: 341 MLIAVEWFIENNLPLSGTARDFPGSLKPQLDA-FKASIGRSNDDAGGNARTGHCFNRFEV 399 +++V NN+ + + L P A F S DD + + G N F Sbjct: 356 KVVSVRHAARNNV-----SANITRILAPAAGALFGGSAAAERDD---DLQAGTYRNSFTA 407 Query: 400 QRRKLPY--RSPFDHTKPVMH-PQTAVVVGPQGEEVFTDKLNRVKVQFRWDR---INPG- 452 R +P + + KP QTA+V G V TD+ +RVKVQF W R NPG Sbjct: 408 IRDSVPMVPAAIAERLKPTARGTQTALVTGAADAAVTTDRNHRVKVQFHWQRGKSPNPGG 467 Query: 453 ----------------DEKASCWVRVSYPNAGENWGEVKVPRVGQELIISFLNGDPDRPV 496 ++ + W+RV+ +G NWG +PRVG E+++ F+ GD DRPV Sbjct: 468 LRETGNLDDKDGNANGNDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPV 527 Query: 497 ATGRLFNQEQPPQW--------HTDGRLSGLKSKEFGGNGFNQLVMDDTTSQNRVHLYSS 548 +L+N P + + G +SG S G+GFNQ V+DDT SQ R+ L SS Sbjct: 528 VVAQLYNGSDAPPFPAGADSGINHAGSISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASS 587 Query: 549 QSNAQLNLGYLVSQADN--ERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRP----GPQ 602 + +QLNLG+LV QAD +R ++ G GF L +D +G V +GL LS+ RP Sbjct: 588 TAKSQLNLGHLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVT 647 Query: 603 GTQLDASEAASLMKASADLARGLSDSASRAGAEALAQ--DSLKDFVDATEDKYSGQGQGS 660 GTQ+DA+ A + +K + LA+ +SDSA++ A + Q + DF+ + G+ S Sbjct: 648 GTQMDAAGAIAQLKGAKSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHPAS 707 Query: 661 AN---------------------RFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGK 699 N +F K ++M +P+ I ++ T +++A+ T+ Sbjct: 708 VNGQDALKSDGSTRNTDAAQPVEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQG 767 Query: 700 DTSIASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSG 759 D ++ + A + S ++ + G++ FAA G V +QA +D L+++A+K + S + Sbjct: 768 DVHWSAADTASAAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVND 827 Query: 760 RVEIHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKSE 819 +EI A+ ++++ AG + + + IT PG + K + H+ PG AS + + + ++ Sbjct: 828 SIEIKARQKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTK 887 Query: 820 LQPSDMEFRHLTDWGEPLAGAAYKAILSDG 849 + D F G PL+ Y+ S G Sbjct: 888 YKLFDEAFVVKDPNGTPLSDIPYRIKSSAG 917 >gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 913 Score = 300 bits (769), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 249/888 (28%), Positives = 410/888 (46%), Gaps = 76/888 (8%) Query: 32 DVLLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVH 91 D LL + G E L +Y + +++R+D+ L+ +A PV + L D + G++ Sbjct: 33 DALLVMHVTGRESLCGAMEYELLCLTSREDLALEDFVALPVEIQLVTDLGLLRTVCGFIA 92 Query: 92 TARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDI---LADVFDQHAYARGNY 148 A D +L S+++ + L + +R + R++ + D+ L + Q + + Sbjct: 93 EAHAGQLDDELVSYRLVLRDALSLMGHRINTRVFLRASEADVTQALVSEWRQRSPLMASS 152 Query: 149 RFEI----VTPALP-RSYCTQY-ETDWHFVQRLMEEEG--WYAYHEQKP----DGS-GHV 195 FE+ + P R + Q+ E+D F++RL + G W+ + P GS H Sbjct: 153 -FEVDWSLLAERFPAREFIMQHNESDADFLRRLWKRRGISWFIRPGEPPLPHQAGSPRHT 211 Query: 196 LVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQK 255 LV+ D+ Q A +++ E + I+ W +R L + ++ D+ G + Sbjct: 212 LVLFDDAVQLPRNAAGAVSYRQDHAPAEEDGIVRWLGTRRLRAGSVSRHAWDHAQDGPMR 271 Query: 256 QTQERVLPEHGALPGE----LEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFTGVS 311 +Q + E G L L+ Y P+ ++D + A R+++ F S Sbjct: 272 -SQVNTVAEQGELGDHFARLLDDYFIEAPHIADDREDFHQIATARMQRLAQETAEFQADS 330 Query: 312 GARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSLKPQLD 371 R L G W + DHP + + +F++ +E + ENN P S LD Sbjct: 331 TIRALRVGEWIGVKDHPELDRRAAHEREFVITRLEVYAENNFPAS-------------LD 377 Query: 372 AFKASIGRSNDDAGGN---------ARTGHCFNRFEVQRRKLPYRSPFDHTK--PVMHPQ 420 + R +D + + A+ NRF RR P + FD P + Q Sbjct: 378 EHVRLVARHHDSSLEDLAPLRRRCLAQGRRYLNRFTCVRRGTPLVAAFDPRVDLPAVRVQ 437 Query: 421 TAVVVGPQGEEVFTDKLNRVKVQFRWDRIN----------PGDEKASCWVRVSYPNAGEN 470 A VVGP GEE++ D L R+K++F R+ G E+ S WVRV+ AG Sbjct: 438 NAHVVGPAGEELYCDALGRIKLRFHGTRMQDHQHAGGAGASGSERDSAWVRVASHWAGRQ 497 Query: 471 WGEVKVPRVGQELIISFLNGDPDRPVATGRLFN-QEQPPQWHTDGRL------SGLKSKE 523 WG + +PRVG E+++ FL GDPD+P+ GR++N Q PP + G L +G+KSKE Sbjct: 498 WGAISLPRVGDEVLVDFLGGDPDKPIVVGRVYNGQSLPPAFSRVGSLPGNRFLAGIKSKE 557 Query: 524 FGGNGFNQLVMDDTTSQNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYG 583 G +NQL +DDT Q L S ++LNLG+L R + G G L TD Sbjct: 558 IQGQRYNQLRLDDTPQQISAQLASQHGQSELNLGWLTHPRAGGRSDARGEGAELRTDQAL 617 Query: 584 AVVTQKGLYLSSYGRPGPQGTQLDASEAASLMKASADLARGLSDSASRAGAEALAQDS-- 641 A+ +G+ +S+ R GTQLD +E L+ D+ + L+ A A+ + Sbjct: 618 ALRGGQGVLISAVMRQEASGTQLDRAEMLGLLHVLQDVQQQLATLAQTHHADDTQLQTFS 677 Query: 642 -LKDFVDATEDKYSGQGQGSANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKD 700 L+D +DA E + Q + KP++ + APAG+ + +D+G + + +E L S + Sbjct: 678 RLRDQLDAWEAGSNTQAKSDGG--GKPMVAVTAPAGVAITSDEGVALGAQKEIDLISVGN 735 Query: 701 TSIASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGR 760 T ++GK LLA V E I LFAQ G++L AA GK+++Q D+++ + + R++ T+ Sbjct: 736 TQFSAGKKLLARVAESICLFAQRLGIQLVAANGKLQLQTHGGDVEVTSAR--RIVLTAAD 793 Query: 761 VEIHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKA-SLHSMPGPASQNFVMPHVQ--K 817 + + + A G+ I + ITQ + G ++ + H + G SQ P V+ Sbjct: 794 EIVLQAPRLRLQAQGAQIDLGGGVITQQSSGDHVIRSGNFHHVSGADSQP---PGVELPA 850 Query: 818 SELQPSDMEFRHLTDWGEPLAGAAYKAILSDGSVRKGTLDAQGIARLS 865 S ++ + G P Y+ L DGSV +G D QG LS Sbjct: 851 STMRTDERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTALS 898 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.132 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,081,656 Number of extensions: 138468 Number of successful extensions: 451 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 389 Number of HSP's successfully gapped: 10 Length of query: 916 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 822 Effective length of database: 1,174,780 Effective search space: 965669160 Effective search space used: 965669160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)