BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0033.p (290 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310279|ref|YP_003774371.1| HD-GYP domain-containing protei... 600 e-173 gi|300310307|ref|YP_003774399.1| HD-GYP domain metal-dependent p... 366 e-102 gi|300313282|ref|YP_003777374.1| HD-GYP domain-containing protei... 329 1e-91 gi|300314021|ref|YP_003778113.1| HD-GYP domain-containing protei... 277 6e-76 gi|300311984|ref|YP_003776076.1| HD-GYP domain-containing protei... 267 6e-73 >gi|300310279|ref|YP_003774371.1| HD-GYP domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 408 Score = 600 bits (1548), Expect = e-173, Method: Compositional matrix adjust. Identities = 290/290 (100%), Positives = 290/290 (100%) Query: 1 VENCKSLVEEIATSVARDSNALLSIIRLKRVDEYTYLHSIAVCTLMVALARTLGMDDIAC 60 VENCKSLVEEIATSVARDSNALLSIIRLKRVDEYTYLHSIAVCTLMVALARTLGMDDIAC Sbjct: 119 VENCKSLVEEIATSVARDSNALLSIIRLKRVDEYTYLHSIAVCTLMVALARTLGMDDIAC 178 Query: 61 KEAGLAGYLHDVGKAFIPLEILNKPDRLSEQEYKIIQRHPALGYDYLKGFSGVPDYVLDV 120 KEAGLAGYLHDVGKAFIPLEILNKPDRLSEQEYKIIQRHPALGYDYLKGFSGVPDYVLDV Sbjct: 179 KEAGLAGYLHDVGKAFIPLEILNKPDRLSEQEYKIIQRHPALGYDYLKGFSGVPDYVLDV 238 Query: 121 CLHHHEKIDGSGYPSRHQGNQISVYSRMAAVCDVYDAVTSERPYKSGWDPAESLSRMASW 180 CLHHHEKIDGSGYPSRHQGNQISVYSRMAAVCDVYDAVTSERPYKSGWDPAESLSRMASW Sbjct: 239 CLHHHEKIDGSGYPSRHQGNQISVYSRMAAVCDVYDAVTSERPYKSGWDPAESLSRMASW 298 Query: 181 QGHFDRPIFLAFVKALGIYPIGSIVKLQSGRTALVIRQNHVDLTKPVVKAFVTTPSIEVV 240 QGHFDRPIFLAFVKALGIYPIGSIVKLQSGRTALVIRQNHVDLTKPVVKAFVTTPSIEVV Sbjct: 299 QGHFDRPIFLAFVKALGIYPIGSIVKLQSGRTALVIRQNHVDLTKPVVKAFVTTPSIEVV 358 Query: 241 ESEIIDLSAPGQTDAIAERSGQDWLKSNGLVIDSLKAMMEASDLPMRISG 290 ESEIIDLSAPGQTDAIAERSGQDWLKSNGLVIDSLKAMMEASDLPMRISG Sbjct: 359 ESEIIDLSAPGQTDAIAERSGQDWLKSNGLVIDSLKAMMEASDLPMRISG 408 >gi|300310307|ref|YP_003774399.1| HD-GYP domain metal-dependent phosphohydrolase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust. Identities = 168/270 (62%), Positives = 209/270 (77%) Query: 1 VENCKSLVEEIATSVARDSNALLSIIRLKRVDEYTYLHSIAVCTLMVALARTLGMDDIAC 60 +E C S+VEEIA SV + N LS++RLK DEYTYLHS+AVC LMVAL RTLG+D+ AC Sbjct: 125 MERCVSVVEEIAGSVIKSPNGALSVLRLKLADEYTYLHSVAVCALMVALGRTLGLDETAC 184 Query: 61 KEAGLAGYLHDVGKAFIPLEILNKPDRLSEQEYKIIQRHPALGYDYLKGFSGVPDYVLDV 120 +EAGL G+LHDVGKAFIP E+LNKP +LS++E+ I++HP LGY YL VPDY DV Sbjct: 185 REAGLGGFLHDVGKAFIPHELLNKPGKLSDEEFSQIKKHPELGYKYLSQDPNVPDYARDV 244 Query: 121 CLHHHEKIDGSGYPSRHQGNQISVYSRMAAVCDVYDAVTSERPYKSGWDPAESLSRMASW 180 CLHHHEKIDG+GYP + I++YSRMAA+CDVYDA+TS+RPYK WDPAE++S MASW Sbjct: 245 CLHHHEKIDGNGYPEGLRAGAITLYSRMAAICDVYDALTSDRPYKRAWDPAEAISAMASW 304 Query: 181 QGHFDRPIFLAFVKALGIYPIGSIVKLQSGRTALVIRQNHVDLTKPVVKAFVTTPSIEVV 240 GHFDR +FLAFVK LGIYP+GSIVKL+SGR+ VIRQN DLT+PV+K F S+ V Sbjct: 305 TGHFDRAMFLAFVKTLGIYPVGSIVKLESGRSGFVIRQNAQDLTRPVLKVFHYDDSMTVT 364 Query: 241 ESEIIDLSAPGQTDAIAERSGQDWLKSNGL 270 ++EI+DL A + D I R G++W + + L Sbjct: 365 DTEILDLLANPEADTIVARGGEEWARLSHL 394 >gi|300313282|ref|YP_003777374.1| HD-GYP domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 329 bits (844), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 152/264 (57%), Positives = 195/264 (73%) Query: 3 NCKSLVEEIATSVARDSNALLSIIRLKRVDEYTYLHSIAVCTLMVALARTLGMDDIACKE 62 C +LVEEIA SV RD N LLS++RLK DEYTYLHS++VC L++ L RTLG+ + AC+E Sbjct: 124 QCVALVEEIACSVLRDPNGLLSVLRLKLNDEYTYLHSVSVCALVIGLGRTLGLSEAACRE 183 Query: 63 AGLAGYLHDVGKAFIPLEILNKPDRLSEQEYKIIQRHPALGYDYLKGFSGVPDYVLDVCL 122 AGL+GYLHDVGKAFI EILNKP +L+ +E+ +I+RHP LGY YL +P Y DVC Sbjct: 184 AGLSGYLHDVGKAFIDDEILNKPGKLTAEEFALIKRHPELGYQYLIQTPDMPAYASDVCR 243 Query: 123 HHHEKIDGSGYPSRHQGNQISVYSRMAAVCDVYDAVTSERPYKSGWDPAESLSRMASWQG 182 HHHE++DG GYP I++Y+RM AVCDVYDA+TSERPYK GWDPAE++S+MA W+G Sbjct: 244 HHHERLDGRGYPDALPAESITLYARMTAVCDVYDALTSERPYKHGWDPAEAISQMARWEG 303 Query: 183 HFDRPIFLAFVKALGIYPIGSIVKLQSGRTALVIRQNHVDLTKPVVKAFVTTPSIEVVES 242 HFDR + LAFVK LGIYP+GS+V+L+SG + +VIRQN DLT+PV+K E Sbjct: 304 HFDRRLLLAFVKTLGIYPVGSLVRLESGVSGVVIRQNPADLTRPVLKVLHLQGPHETTIG 363 Query: 243 EIIDLSAPGQTDAIAERSGQDWLK 266 ++DL A +TD I R ++W + Sbjct: 364 GVLDLMAWPRTDTIIGRGDEEWTR 387 >gi|300314021|ref|YP_003778113.1| HD-GYP domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 401 Score = 277 bits (709), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 132/248 (53%), Positives = 175/248 (70%) Query: 1 VENCKSLVEEIATSVARDSNALLSIIRLKRVDEYTYLHSIAVCTLMVALARTLGMDDIAC 60 V++ LV EI SV+R+++AL+S+ RLK D+YTYLHS+AVC +M++LA LGM Sbjct: 128 VKDAAELVTEITASVSRNADALISLARLKTTDDYTYLHSVAVCAMMISLANQLGMTPQQT 187 Query: 61 KEAGLAGYLHDVGKAFIPLEILNKPDRLSEQEYKIIQRHPALGYDYLKGFSGVPDYVLDV 120 K+AG+AG LHDVGK +PL+ILNKP +L+E+E+ ++ H G+ L+ G+ + LDV Sbjct: 188 KQAGMAGLLHDVGKMAVPLDILNKPAKLTEEEFASVRMHTVQGHGILQQIEGIGEVALDV 247 Query: 121 CLHHHEKIDGSGYPSRHQGNQISVYSRMAAVCDVYDAVTSERPYKSGWDPAESLSRMASW 180 LHHHEKIDGSGYP + + IS+ ++M AVCDVYDA+TS RPYK+GWDPA S+ MA+ Sbjct: 248 SLHHHEKIDGSGYPFNLKADSISIMAKMGAVCDVYDAITSNRPYKAGWDPARSIRHMAAS 307 Query: 181 QGHFDRPIFLAFVKALGIYPIGSIVKLQSGRTALVIRQNHVDLTKPVVKAFVTTPSIEVV 240 GHFD AFVKA+GIYP GS V LQSGR +V+ Q L P VK F +T + + Sbjct: 308 AGHFDPITMQAFVKAIGIYPTGSCVMLQSGRLGVVVDQRPDQLLTPRVKVFYSTANRMPL 367 Query: 241 ESEIIDLS 248 ESEIIDL+ Sbjct: 368 ESEIIDLA 375 >gi|300311984|ref|YP_003776076.1| HD-GYP domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 406 Score = 267 bits (683), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 122/247 (49%), Positives = 172/247 (69%) Query: 1 VENCKSLVEEIATSVARDSNALLSIIRLKRVDEYTYLHSIAVCTLMVALARTLGMDDIAC 60 V+ LV EI SV+R+++A++S++RLK D YTY+HS+AVC +M++LA LG+ Sbjct: 131 VKEASDLVREINASVSRNADAMISLVRLKTADNYTYMHSVAVCAMMISLADQLGLSAQER 190 Query: 61 KEAGLAGYLHDVGKAFIPLEILNKPDRLSEQEYKIIQRHPALGYDYLKGFSGVPDYVLDV 120 ++AG+AG LHD+GK +P ILNKP +L+E+E+ +Q HP G+ L+ G+ D LDV Sbjct: 191 QQAGMAGLLHDIGKMTVPPSILNKPSKLTEEEFVSVQSHPLAGHRLLQELPGIGDAPLDV 250 Query: 121 CLHHHEKIDGSGYPSRHQGNQISVYSRMAAVCDVYDAVTSERPYKSGWDPAESLSRMASW 180 LHHHEK+DG+GYP + G IS+ +RM A+CDVYDA+TS+RPYKSGWDP+ S+ MA Sbjct: 251 SLHHHEKMDGTGYPYKLSGRDISMTARMGAICDVYDAITSDRPYKSGWDPSRSIQHMAQS 310 Query: 181 QGHFDRPIFLAFVKALGIYPIGSIVKLQSGRTALVIRQNHVDLTKPVVKAFVTTPSIEVV 240 +GHFD + AFVKA+GIYP+GS V +Q+G A+V+ Q L P+V+ F +T V Sbjct: 311 KGHFDFDVLQAFVKAVGIYPVGSCVLMQTGHLAMVLEQRPDSLLAPLVRIFYSTNKKIAV 370 Query: 241 ESEIIDL 247 +IDL Sbjct: 371 TPTLIDL 377 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 909,851 Number of extensions: 38244 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 10 Length of query: 290 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 206 Effective length of database: 1,222,130 Effective search space: 251758780 Effective search space used: 251758780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)