BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0031.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310280|ref|YP_003774372.1| dienelactone hydrolase [Herbasp...   587   e-169
gi|300311783|ref|YP_003775875.1| dienelactone hydrolase [Herbasp...   108   5e-25

>gi|300310280|ref|YP_003774372.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  587 bits (1514), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 288/291 (98%), Positives = 288/291 (98%)

Query: 1   MPLPLLLAATLVAGLGAANGAYATLIEQQIDVPVSLKNMYGKSVEQKMRVTIWRDDANPA 60
           MPLPLLLAATLVAGLGAANGAYA LIEQQIDVPVSLKNMYGK VEQKMRVTIWRDDANPA
Sbjct: 16  MPLPLLLAATLVAGLGAANGAYAALIEQQIDVPVSLKNMYGKPVEQKMRVTIWRDDANPA 75

Query: 61  PAPILVLNHGRAAEAAGRANLGRARFTVASRFFVRYGFVVAVPTRVGYGVTGGDDLEDAG 120
           PAPILVLNHGRAAEAAGRANLGRARFTVASRFFVRYGFVVAVPTRVGYGVTGGDDLEDAG
Sbjct: 76  PAPILVLNHGRAAEAAGRANLGRARFTVASRFFVRYGFVVAVPTRVGYGVTGGDDLEDAG 135

Query: 121 GCNSRFYPPVYEAAAQQTIATINAVKPLPGTDGARVVVVGQSFGGTTAITVASHQVPGLK 180
           GCNSRFYPPVYEAAAQQTIATINAVK LPGTDGARVVVVGQSFGGTTAITVASHQVPGLK
Sbjct: 136 GCNSRFYPPVYEAAAQQTIATINAVKALPGTDGARVVVVGQSFGGTTAITVASHQVPGLK 195

Query: 181 AAINFAGGGGGNPKTHPQQPCGPQKLEQMFGDYGKSSQVPTLWIYTENDQWMGPTYPRQW 240
           AAINFAGGGGGNPKTHPQQPCGPQKLEQMFGDYGKSSQVPTLWIYTENDQWMGPTYPRQW
Sbjct: 196 AAINFAGGGGGNPKTHPQQPCGPQKLEQMFGDYGKSSQVPTLWIYTENDQWMGPTYPRQW 255

Query: 241 FNAFQAAGGKGEFVLFPPHGEDGHLLFARFPQSWQPRVAEFLEQQGFTAHR 291
           FNAFQAAGGKGEFVLFPPHGEDGHLLFARFPQSWQPRVAEFLEQQGFTAHR
Sbjct: 256 FNAFQAAGGKGEFVLFPPHGEDGHLLFARFPQSWQPRVAEFLEQQGFTAHR 306


>gi|300311783|ref|YP_003775875.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  108 bits (270), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 116/249 (46%), Gaps = 18/249 (7%)

Query: 47  KMRVTIWRDDANPAPAPILVLNHGRAAEAAGRANLGRARFTVASRFFVRYGFVVAVPTRV 106
           K+  T++R      P P+L++NHG++      A   R R  V +  FVR G+ V +P R 
Sbjct: 63  KLETTLFRPPGE-GPFPLLIINHGKSP--GNPAFQPRGRSVVMATEFVRRGYAVLLPMRK 119

Query: 107 GYGVTGGDDLEDAGGCNSRFYPPVYEAAAQQTIATINAVKPLPGTDGARVVVVGQSFGGT 166
           G+  +GG  ++  GGCN R      EA A    A ++  +     D  RV+++GQS GG 
Sbjct: 120 GFSRSGGMYVD--GGCNIRGNG---EAQADDLQAALDYARQQAWVDKDRVIIMGQSHGGL 174

Query: 167 TAITVASHQVPGLKAAINFAGGGGGNPKTHPQQPC-GPQKLEQMFGDYGKSSQVPTLWIY 225
           T +       PG++A +NFAGG       +    C     L   FG +G  +++P+LW Y
Sbjct: 175 TTMAFGERNPPGVRALLNFAGG-----LRYDATGCIWKSALVDAFGVFGSRTRIPSLWFY 229

Query: 226 TENDQWMGPTYPRQWFNAFQAAGGKGEFVLFPPHGEDGHLLFAR---FPQSWQPRVAEFL 282
            END +  P    + + A+  AGG    V F P   D H +       P  W P  A  L
Sbjct: 230 GENDSYFNPELAARMYEAYTKAGGPATLVAFGPFKSDAHGMSGSRDGIPIWWPPTEA-LL 288

Query: 283 EQQGFTAHR 291
           +Q G    +
Sbjct: 289 KQVGMPTEK 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 938,228
Number of extensions: 39284
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)