BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0028.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310283|ref|YP_003774375.1| NADH-dependent FMN reductase ox...   367   e-103
gi|300310976|ref|YP_003775068.1| NAD(P)H-dependent FMN reductase...    71   6e-14

>gi|300310283|ref|YP_003774375.1| NADH-dependent FMN reductase
           oxidorreductase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  367 bits (942), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/190 (98%), Positives = 188/190 (98%)

Query: 1   MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQL 60
           MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHL IRTEVVALSDL GQLLSATELAQL
Sbjct: 1   MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLVIRTEVVALSDLGGQLLSATELAQL 60

Query: 61  PDPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120
           PDPVRQKIAAIESADVL+AGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH
Sbjct: 61  PDPVRQKIAAIESADVLVAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120

Query: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVLQAVA 180
           ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVLQAVA
Sbjct: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVLQAVA 180

Query: 181 ATPVQAHVHV 190
           ATPVQAHVHV
Sbjct: 181 ATPVQAHVHV 190


>gi|300310976|ref|YP_003775068.1| NAD(P)H-dependent FMN reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 70.9 bits (172), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 3/129 (2%)

Query: 5   LQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQLPDPV 64
           + ++++AGS   PSR+  LLH +  +L Q L  R   + + DL GQ +   +       V
Sbjct: 1   MTILLLAGSPSAPSRSTRLLHHVGDKLAQ-LGHRYARLEVRDLPGQAILRADWNDAE--V 57

Query: 65  RQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHALAI 124
           +  +A +  A  ++  +PVY+ +YSG+ K   DL+PQ  L  K VL  ATGGS  H LA+
Sbjct: 58  KAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLAL 117

Query: 125 DHQLRPLFA 133
           D+ LRP+ +
Sbjct: 118 DYALRPVLS 126


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 626,028
Number of extensions: 27361
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)