BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0026.p (263 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 507 e-145 gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 265 4e-72 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 221 6e-59 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 188 4e-49 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 187 6e-49 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 507 bits (1305), Expect = e-145, Method: Compositional matrix adjust. Identities = 260/263 (98%), Positives = 261/263 (99%) Query: 1 VRASAAPVLQLEGVSLSFGGVQALRQVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRP 60 +RASAAPVLQLEGVSLSFGGVQALR VDLALHEREILAVIGPNGAGKSSLVNVMSGLYRP Sbjct: 1 MRASAAPVLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRP 60 Query: 61 TQGTVSLGGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQI 120 TQGTVSLGGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQI Sbjct: 61 TQGTVSLGGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQI 120 Query: 121 IGLGRARRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLL 180 IGLGRARRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLL Sbjct: 121 IGLGRARRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLL 180 Query: 181 DEPMAGMTVTEKSEMADFVRAARDQFATAILLIEHDIGLVFGLSDRVVVLHHGSKIADGA 240 DEPMAGMTVTEKSEMADFVRAARDQF TAILLIEHDIGLVFGLSDRVVVLHHGSKIADGA Sbjct: 181 DEPMAGMTVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGA 240 Query: 241 PAAVRQDAAVIEAYLGVAQQEAA 263 PAAVRQDAAVIEAYLGVAQQEAA Sbjct: 241 PAAVRQDAAVIEAYLGVAQQEAA 263 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 265 bits (676), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 129/252 (51%), Positives = 174/252 (69%) Query: 8 VLQLEGVSLSFGGVQALRQVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 +L L+ +SLSFGGV+AL + + E EI A+IGPNGAGKSS++NV++G+Y P +G + Sbjct: 42 ILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILY 101 Query: 68 GGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRAR 127 G+ + + + R G+ARTFQN+ALFKG++V DNI+ GR MR+ + + G AR Sbjct: 102 RGQPRAGMHPSAIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAAR 161 Query: 128 RERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMAGM 187 E I+ R + EQ++ FL+++ + VG LPYGLQKRVELARAL A P +LLLDEPMAGM Sbjct: 162 NEEIEHRRKVEQVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGM 221 Query: 188 TVTEKSEMADFVRAARDQFATAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQD 247 V EK +M F+ DQF T I+LIEHD+G+V +SDRVVVL +G KI DG P V + Sbjct: 222 NVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGN 281 Query: 248 AAVIEAYLGVAQ 259 VI+AYLG + Sbjct: 282 EDVIKAYLGTSH 293 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 221 bits (562), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 106/256 (41%), Positives = 165/256 (64%) Query: 1 VRASAAPVLQLEGVSLSFGGVQALRQVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRP 60 + AS +L++ +S+ FGG+ A+ V LA+ ERE+ A+IGPNGAGK+++ N +SG YRP Sbjct: 1 MNASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRP 60 Query: 61 TQGTVSLGGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQI 120 T G + L G + + P+ ++ + G+ RTFQN+ LFK ++V +N+++ + + + + + Sbjct: 61 TSGEIMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 Query: 121 IGLGRARRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLL 180 + R+ +A +A + L L A A R+ G L YGLQ+RVE+AR ++ +PRLLLL Sbjct: 121 LKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 Query: 181 DEPMAGMTVTEKSEMADFVRAARDQFATAILLIEHDIGLVFGLSDRVVVLHHGSKIADGA 240 DEP AG+ EK E++ + R + A+LLIEHD+ L+ G+SDR++V+ HG I G Sbjct: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 Query: 241 PAAVRQDAAVIEAYLG 256 P VR D VI+AYLG Sbjct: 241 PEQVRSDERVIKAYLG 256 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 188 bits (478), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 1/252 (0%) Query: 8 VLQLEGVSLSFGGVQALRQVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 +L++ VS FGG+QAL V + + +I +IGPNGAGK++ NV++GLY+P GT L Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 68 GGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRAR 127 G+ + + G+ARTFQN+ LF ++V +N+++G R + + AR Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAR 124 Query: 128 RERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMAGM 187 E R ++++++ F+ + +A+R L YG Q+R+E+ARAL P+LL LDEP AGM Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 188 TVTEKSEMADFVRAARDQFATAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQD 247 TEK + + + + + T ILLIEHD+ L+ GL +R+ VL +G IA+G PA V+++ Sbjct: 185 NATEKLGLRELLVKIQAEGKT-ILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKN 243 Query: 248 AAVIEAYLGVAQ 259 AVIEAYLG Sbjct: 244 PAVIEAYLGAGH 255 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 187 bits (476), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 155/252 (61%), Gaps = 1/252 (0%) Query: 8 VLQLEGVSLSFGGVQALRQVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 +L++ VS FGG+QAL V + + +I +IGPNGAGK++ NV++GLY+P GT L Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 68 GGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRAR 127 G+ + + G+ARTFQN+ LF ++V +N+++G + + + AR Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 124 Query: 128 RERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMAGM 187 E R ++++++ F+ + +A+R L YG Q+R+E+ARAL P+LL LDEP AGM Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 188 TVTEKSEMADFVRAARDQFATAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQD 247 TEK + + + + + T ILLIEHD+ L+ GL +R+ VL +G IA+G PA V+++ Sbjct: 185 NATEKLGLRELLVKIQAEGKT-ILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKN 243 Query: 248 AAVIEAYLGVAQ 259 AVIEAYLG Sbjct: 244 PAVIEAYLGAGH 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 776,770 Number of extensions: 31859 Number of successful extensions: 480 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 144 Length of query: 263 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 180 Effective length of database: 1,226,865 Effective search space: 220835700 Effective search space used: 220835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)