BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0023.p
         (438 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310288|ref|YP_003774380.1| hypothetical protein Hsero_0955...   889   0.0  
gi|300311878|ref|YP_003775970.1| amino acid ABC transporter peri...   434   e-122

>gi|300310288|ref|YP_003774380.1| hypothetical protein Hsero_0955
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/438 (100%), Positives = 438/438 (100%)

Query: 1   MLHSKILKAIALTTVLLTAGLQQARADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVN 60
           MLHSKILKAIALTTVLLTAGLQQARADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVN
Sbjct: 1   MLHSKILKAIALTTVLLTAGLQQARADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVN 60

Query: 61  LRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTADK 120
           LRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTADK
Sbjct: 61  LRDGGVGGVKLTWEEGETQYEVERGVEVYERLKQRPNIATWNPLSVGIAYALLDRVTADK 120

Query: 121 VPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGADKLKGKKIVVLYH 180
           VPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGADKLKGKKIVVLYH
Sbjct: 121 VPLLTINHGRTDTTDGRVFKYIFPLLLNPYSETSGIVNYIASKEGGADKLKGKKIVVLYH 180

Query: 181 GSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNP 240
           GSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNP
Sbjct: 181 GSPYGKETIPIYKLLSEKYGFSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNP 240

Query: 241 VALKTAQKSGFPADRIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTV 300
           VALKTAQKSGFPADRIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTV
Sbjct: 241 VALKTAQKSGFPADRIIGNVWSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTV 300

Query: 301 YGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQARFGKRTLTGDEIRWGLENLNID 360
           YGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQARFGKRTLTGDEIRWGLENLNID
Sbjct: 301 YGAGKGNLQDPKRIGSVYHNLGVLNGILNVEAIRIAQARFGKRTLTGDEIRWGLENLNID 360

Query: 361 QARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWHVVSDWIAPDWKLLRPIIEKS 420
           QARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWHVVSDWIAPDWKLLRPIIEKS
Sbjct: 361 QARTAALGAKGLFHSIHVTWDNHEGDGLVAFQQWDGKQWHVVSDWIAPDWKLLRPIIEKS 420

Query: 421 ALAYAKEKNIKVRKSIDD 438
           ALAYAKEKNIKVRKSIDD
Sbjct: 421 ALAYAKEKNIKVRKSIDD 438


>gi|300311878|ref|YP_003775970.1| amino acid ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 443

 Score =  434 bits (1115), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/407 (52%), Positives = 275/407 (67%), Gaps = 6/407 (1%)

Query: 28  EQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVNLRDGGVGGVKLTWEEGETQYEVERGVE 87
           +QF  + SYRVGPY   G  ++GG++DYLN +N+++GGV GVKL+WEE ET+Y   +GVE
Sbjct: 33  DQFIAIPSYRVGPYGTNGQSYYGGYVDYLNYINIKEGGVNGVKLSWEECETEYNNAKGVE 92

Query: 88  VYERLKQRPNIA---TWNPLSVGIAYALLDRVTADKVPLLTINHGRTDTTDGRVFKYIFP 144
            YER+K +  +      NP++ GI+YAL+D+   DKVPL+ I +GRTD  DG VF Y FP
Sbjct: 93  CYERMKNKNPVTHGTAINPMATGISYALIDKTAEDKVPLVMIGYGRTDAVDGSVFPYAFP 152

Query: 145 LLLNPYSETSGIVNYIASKEGGADKLKGKKIVVLYHGSPYGKETIPIYKLLSEKYGFSLQ 204
           L+     + S IV Y+A K  G+  L GKKIV LYH S YGKE I   +  +    F L 
Sbjct: 153 LVTTYQMQVSAIVKYLAGKNNGS--LAGKKIVFLYHDSAYGKEPIVALQAEASIGKFKLV 210

Query: 205 QIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNPVALKTAQKSGFPADRIIGNVWSNS 264
           +I V HPGN+Q AQWL IR+  PDYV+  GWGVMN  ALK AQK G+  D+I+G+ W+ S
Sbjct: 211 EIPVAHPGNEQGAQWLRIRQENPDYVIFWGWGVMNQTALKAAQKVGYARDKIVGSWWAGS 270

Query: 265 EEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTVYGAGKGNLQDPKRIGSVYHNLGVL 324
           EED IPAGDAAKGY++ T   AG   PV+ +I K VYGAGKGN+QD  ++GS+ +N GV 
Sbjct: 271 EEDTIPAGDAAKGYLSATWNVAGKDVPVIADIDKVVYGAGKGNMQDKNKLGSILYNRGVS 330

Query: 325 NGILNVEAIRIAQARFGK-RTLTGDEIRWGLENLNIDQARTAALGAKGLFHSIHVTWDNH 383
             I  VEA+R AQ ++GK + ++G+++RWG ENLNI  AR  ALGA GL   I  + DNH
Sbjct: 331 AAIATVEAVRTAQGKYGKGKVMSGEQVRWGFENLNITDARLKALGATGLLPEIKTSCDNH 390

Query: 384 EGDGLVAFQQWDGKQWHVVSDWIAPDWKLLRPIIEKSALAYAKEKNI 430
           EG G V  QQWDG +W +VSDWI  +  L+ P+ + SA  YAKEK I
Sbjct: 391 EGSGKVKIQQWDGSKWVLVSDWIEGNKNLIHPLFKASAAKYAKEKGI 437


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,415,561
Number of extensions: 61239
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,203,190
Effective search space: 421116500
Effective search space used: 421116500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)