BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0015.p (366 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [H... 723 0.0 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 206 2e-54 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 203 1e-53 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 201 5e-53 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 200 2e-52 >gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 366 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/366 (98%), Positives = 363/366 (99%) Query: 1 VTLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 +TLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL Sbjct: 1 MTLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 Query: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIAEKL 120 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIA+KL Sbjct: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKL 120 Query: 121 HIAHLLQRLPGELSGGQQQRSRAARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA 180 HIAHLLQRLPGELSGGQQQR ARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA Sbjct: 121 HIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA 180 Query: 181 TGDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNL 240 TGDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNL Sbjct: 181 TGDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNL 240 Query: 241 LEATAIASAPGVAAICMSDGSVLEIAGRPLALSEGQSCKLGIRCNDVRLEALTGPGVSLG 300 LEATAIASAPGVAAICMSDGSVLEIAGRPLALSEGQSCKLGIRCNDVRLEALTGPGVSLG Sbjct: 241 LEATAIASAPGVAAICMSDGSVLEIAGRPLALSEGQSCKLGIRCNDVRLEALTGPGVSLG 300 Query: 301 CSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLS 360 CSVTLAELSGSETYLHLRHG+VPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLS Sbjct: 301 CSVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLS 360 Query: 361 APMETR 366 APMETR Sbjct: 361 APMETR 366 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 206 bits (524), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 203/359 (56%), Gaps = 10/359 (2%) Query: 3 LELKQVAKTVGAETH----LYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGR 58 + LKQV KT GA T ++ +D +A G V++GP+ GK++L+R++AGL++ ++G+ Sbjct: 4 IHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSGQ 63 Query: 59 VLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIAE 118 +++ + V + +ER++AMV+Q + YP +TV++N+A L++Q + EI RV+ A Sbjct: 64 IVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAAA 123 Query: 119 KLHIAHLLQRLPGELSGGQQQRSRAARALIKRAPLVLLDEPLVNLDYKLREELRSELISL 178 L + LL+R P +LSGGQ+QR RA++++ + L DEPL NLD KLR ++R E+ L Sbjct: 124 ILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQKL 183 Query: 179 FATGDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPM 238 A+ TT +Y T + EA+ LG VM++G Q E++ PA+T VA+ PPM Sbjct: 184 HASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSPPM 243 Query: 239 NLLEATAIASAPGVAAICMSDGSVLEIAG--RPLALSEGQSCKLGIRCNDVRLEALTGPG 296 NLL+ SA G A+ +S G+ +I +PL + GQ LG+R + L L G Sbjct: 244 NLLQGK--LSADG-ASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHL-LPILDGSA 299 Query: 297 VSLGCSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQ 355 L V L E G+E +H R G LV + +V G + S A FD + Sbjct: 300 AQLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVK 358 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 203 bits (517), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 195/367 (53%), Gaps = 20/367 (5%) Query: 3 LELKQVAKTV-GAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLV 61 + +KQ+ KT G L L+L++ G VL+GP+ GK++L+R++ GL++ + G + + Sbjct: 4 VNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGELAI 63 Query: 62 DGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIAEKLH 121 GQ V + ER +AMV+Q + YP + V++N+A L++ + +I R++ A L Sbjct: 64 GGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAAILK 123 Query: 122 IAHLLQRLPGELSGGQQQRSRAARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFAT 181 I HLLQRLP ELSGGQ+QR RA++++ L L DEPL NLD LR + R E+ L Sbjct: 124 IDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKLHRQ 183 Query: 182 GDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNLL 241 T+VY T + EA+ LG VMH+GR+ Q LEL+ P + VA P MN Sbjct: 184 LAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKMNFF 243 Query: 242 EATAIASAPGVAAICMSDGSVLEIAG--------RPLALSEGQSCKLGIRCNDVRLEALT 293 + GV C G +EIAG PL ++ G + LG+R +R E L Sbjct: 244 Q--------GVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIR-EGL- 293 Query: 294 GPGVSLGCSVTLAELSGSETYLHLR-HGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLF 352 G G L V L E G +L++ G +V + G V IG + +S+ + LF Sbjct: 294 GDGQPLHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLF 353 Query: 353 DTQGRLL 359 D QG+ L Sbjct: 354 DAQGQAL 360 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 201 bits (512), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 122/353 (34%), Positives = 194/353 (54%), Gaps = 17/353 (4%) Query: 3 LELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVD 62 + L+ V K G + +D + G VLLGP+ GK++ +R+IAGLDKP++G + + Sbjct: 4 ISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIG 63 Query: 63 GQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIAEKLHI 122 G+DVT + +R ++MV+Q + +P L+V +NI +R++K+P R+K +A+ L + Sbjct: 64 GRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGL 123 Query: 123 AHLLQRLPGELSGGQQQRSRAARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATG 182 AHLL+R P +LSGGQQQR RA+I AP+ L+DEPL NLD +LR+E+R E+ +L Sbjct: 124 AHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQL 183 Query: 183 DTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNLLE 242 + T+VY T + EA+ + ++ +GR+ Q A +L+ PA+ A PPMNLL Sbjct: 184 NMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMNLLP 243 Query: 243 ATAIASAPGVAAICMSDGSVLEIAGRPLALSE-GQS-CKLGIRCNDVRLEALTGPGVSLG 300 A L I+G + L + GQ+ +LG+R +RL + V Sbjct: 244 LEPHAEG-------------LVISGSDVILRDLGQTPWQLGLRPEHIRLADASDSSVP-- 288 Query: 301 CSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFD 353 V E G++T + R G L+ + G H + G V+++ A + FD Sbjct: 289 AVVETVEYFGADTIIGARIGAASLLVRAPGQHRLGAGDPVRLAWDARDQYFFD 341 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 200 bits (508), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 197/355 (55%), Gaps = 5/355 (1%) Query: 2 TLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLV 61 +++++ V K G+ + +D+++A G VL+GP+ GK++L+R++AGL++ T G +L+ Sbjct: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 62 DGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIAEKLH 121 G V V ++R++AMV+Q + YP +TV +N+A L L K+ + + +RVK+ A+ L Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILG 122 Query: 122 IAHLLQRLPGELSGGQQQRSRAARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFAT 181 + LL R P +LSGGQ+QR RA+++ + L DEPL NLD KLR ++R+E+ L Sbjct: 123 LNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQR 182 Query: 182 GDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNLL 241 TT +Y T + EA+ + VM G + Q L+L++ PA+ VA P MN + Sbjct: 183 LKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMNFI 242 Query: 242 EATAIASAPGVAAICMSDGS-VLEIAGRPLALSEGQSCKLGIRCNDVRLEALTGPGVSLG 300 AT +A G A + +DG+ V G L ++GQ G+R + + A G + Sbjct: 243 PATLRRNATG-AEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGA---AGQGIA 298 Query: 301 CSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQ 355 V + E +G++T + R GD L + H+ G + + ++ LFD + Sbjct: 299 TKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAE 353 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,122,805 Number of extensions: 47136 Number of successful extensions: 512 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 356 Number of HSP's successfully gapped: 132 Length of query: 366 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 280 Effective length of database: 1,212,660 Effective search space: 339544800 Effective search space used: 339544800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)