BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0014.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [H... 739 0.0 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 202 4e-53 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 201 6e-53 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 197 7e-52 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 197 1e-51 >gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/362 (98%), Positives = 359/362 (99%) Query: 1 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ Sbjct: 1 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV Sbjct: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR Sbjct: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF Sbjct: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 Query: 241 IGSPGMNFCPVRVEGDAVLLGQQRLQIEAAQLQALKNSNGALKLGIRPEFVELVAPGATG 300 IGSPGMNFCPVR+EGDAVLLGQQRLQIEAAQLQALKNSNG LKLGIRPEFVEL APGATG Sbjct: 241 IGSPGMNFCPVRLEGDAVLLGQQRLQIEAAQLQALKNSNGELKLGIRPEFVELAAPGATG 300 Query: 301 AVSAEITQVQHLGTSQLVTAQLEGMSVKARLSPEMKIATGNQWLRLAKPETIYFSNDERI 360 AVSAEITQVQHLGTSQLVTAQ EGMSVKARLSPEMKIATGNQWLRLAKPETIYFSNDERI Sbjct: 301 AVSAEITQVQHLGTSQLVTAQFEGMSVKARLSPEMKIATGNQWLRLAKPETIYFSNDERI 360 Query: 361 GR 362 GR Sbjct: 361 GR 362 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 202 bits (514), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 196/354 (55%), Gaps = 15/354 (4%) Query: 1 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA I + L Y+G P L P+++ DG LLGPSGCGKST+L +I+GL Sbjct: 1 MADIHCQALAKHYAGGPP-----VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLED 55 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 S G + G + + R+RN+A VFQ LY MSV+DN+AF LR K E+ RV Sbjct: 56 ISGGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRV 115 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 RE+A +L+L L+++ +S +Q+ ++ R ++ K + LFDEPL+ +D ++ +LR Sbjct: 116 REVAALLNLEALLERKPRAMSGGQQQRAAIARAII-KTPSVFLFDEPLSNLDAKLRAQLR 174 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 +K +H +L+ T +YVTHDQ+EA+T AD V++M +G++VQ G P L+ P + F F Sbjct: 175 GDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGF 234 Query: 241 IGSPGMNFCPVRVE-GDAVLL---GQQRLQIEAAQLQALKNSNGALKLGIRPEFVELVA- 295 IG+P MNF V+ D L QR + + L+++ A+KL +RP+ V + Sbjct: 235 IGTPAMNFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAM-AVKLAVRPDHVRIAGE 293 Query: 296 --PGATGAVSAEITQVQHLGTSQLVTAQLEGMSVKARLSPEMKIATGNQWLRLA 347 P A+ + V+ LG L+T + ++ A L P ++ L LA Sbjct: 294 REPAASLTCPVSVELVEILGADALLTTRCGDQTLTA-LVPADRLPQPGATLTLA 346 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 201 bits (512), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 117/332 (35%), Positives = 188/332 (56%), Gaps = 21/332 (6%) Query: 1 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA + +NL Y N ++ +N+ EDG +GPSGCGKSTLL +I+GL + Sbjct: 1 MAAVSIRNLAKRYDDNEV------MRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEE 54 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 S+G + R M + R +A VFQ LY MS++DN+AF L+ ++ E+ A V Sbjct: 55 ISDGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAV 114 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 + A++L + L ++ LS +Q++++GR + R+ + LFDEPL+ +D ++ ++R Sbjct: 115 QHAAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQP-SVFLFDEPLSNLDAALRVKMR 173 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 + ++H LK T+IYVTHDQ+EA+T AD++VV++EG++ Q G P+ L+ P + FV F Sbjct: 174 LEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGF 233 Query: 241 IGSPGMNF-----CPVRVEGDAVLL---GQQRLQIEAAQLQALKNSNGALKLGIRPEFVE 292 IGSP MNF ++ +G V L G Q ++ + LQ + + LG+RPE + Sbjct: 234 IGSPKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQK----VTLGVRPEHLN 289 Query: 293 LVAPGATGAVSAEITQVQHLGTSQLVTAQLEG 324 + A+ A T ++ LG + A EG Sbjct: 290 IAQ--GQAALQARCTALELLGDFSYLYAAYEG 319 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 197 bits (502), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 116/347 (33%), Positives = 196/347 (56%), Gaps = 10/347 (2%) Query: 1 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA I K + Y ++ + ++ DG ++GPSGCGKSTLL +++GL + Sbjct: 1 MAAIHLKQVRKTYGAGTKAVD--VIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEE 58 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 S GQ++ R + + ++R+IA VFQ LY M+V+ N+A+ L+ + +++ E+ ARV Sbjct: 59 ISSGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARV 118 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 + A +L+L L++ LS +Q++++GR +VRK A LFDEPL+ +D ++ ++R Sbjct: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKP-AVFLFDEPLSNLDAKLRVQMR 177 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 +++++H L+ T +YVTHDQVEA+T ++VM G Q G P ++ RP TFV F Sbjct: 178 LEIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASF 237 Query: 241 IGSPGMNFCPVRVEGDAVLLGQQRLQIEAAQL----QALKNSNGALK-LGIRPEFVELVA 295 IGSP MN ++ D + + A+ + Q L + G + LG+RPE + + Sbjct: 238 IGSPPMNLLQGKLSADGASF--EVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPIL 295 Query: 296 PGATGAVSAEITQVQHLGTSQLVTAQLEGMSVKARLSPEMKIATGNQ 342 G+ +S E+ V+ LG LV A+ G ++ R +++ TG + Sbjct: 296 DGSAAQLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQR 342 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 197 bits (501), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 105/308 (34%), Positives = 179/308 (58%), Gaps = 10/308 (3%) Query: 40 LLGPSGCGKSTLLNIISGLLQPSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVF 99 LLGPSGCGKST L +I+GL +PS G + GRD+T++ R I+ VFQ L+ +SV Sbjct: 34 LLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVTQLPPAQRKISMVFQSYALFPHLSVR 93 Query: 100 DNLAFPLRNRKIAEREVQARVREIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDV 159 DN+ F +R RK + R++ +A++L L L++R A LS +Q+++LGR ++ D Sbjct: 94 DNILFGVRVRKEPRAGYETRLKRVADILGLAHLLERRPAQLSGGQQQRVALGRAII-ADA 152 Query: 160 AAILFDEPLTVIDPHMKWELRQKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKV 219 L DEPL+ +D ++ E+R++++ + QL +T++YVTHDQ EA++ AD+V+++ EG++ Sbjct: 153 PVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTHDQTEAMSMADQVILLREGRI 212 Query: 220 VQQGKPEALFLRPDHTFVGYFIGSPGMNFCPVRVEGDAVLLGQQRLQIEAAQLQALKNSN 279 Q P L+ +P F FIG+P MN P+ + ++ I + + Sbjct: 213 EQDAAPADLYAQPATAFAARFIGTPPMNLLPLEPHAEGLV-------ISGSDVILRDLGQ 265 Query: 280 GALKLGIRPEFVELVAPGATGAVSAEITQVQHLGTSQLVTAQLEGMSVKARLSPEMKIAT 339 +LG+RPE + L A + +V A + V++ G ++ A++ S+ R + ++ Sbjct: 266 TPWQLGLRPEHIRL-ADASDSSVPAVVETVEYFGADTIIGARIGAASLLVRAPGQHRLGA 324 Query: 340 GNQWLRLA 347 G+ +RLA Sbjct: 325 GDP-VRLA 331 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,127,664 Number of extensions: 46338 Number of successful extensions: 470 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 339 Number of HSP's successfully gapped: 129 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)