BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0006.p (606 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 979 0.0 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 503 e-143 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 369 e-103 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 357 2e-99 gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis tra... 232 6e-62 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/492 (100%), Positives = 492/492 (100%) Query: 1 MKSTSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWS 60 MKSTSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWS Sbjct: 20 MKSTSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWS 79 Query: 61 DSKKLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTK 120 DSKKLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTK Sbjct: 80 DSKKLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTK 139 Query: 121 RPWYQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVA 180 RPWYQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVA Sbjct: 140 RPWYQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVA 199 Query: 181 IKPTPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGR 240 IKPTPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGR Sbjct: 200 IKPTPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGR 259 Query: 241 RQMLFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLG 300 RQMLFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLG Sbjct: 260 RQMLFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLG 319 Query: 301 RLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTI 360 RLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTI Sbjct: 320 RLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTI 379 Query: 361 HAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIA 420 HAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIA Sbjct: 380 HAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIA 439 Query: 421 TQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 480 TQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 440 TQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 499 Query: 481 VVASEVRSLAQR 492 VVASEVRSLAQR Sbjct: 500 VVASEVRSLAQR 511 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust. Identities = 275/489 (56%), Positives = 343/489 (70%), Gaps = 6/489 (1%) Query: 4 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 63 +SLR RLI +C IV LAM+ + N T RS T+ + +Q QL +S AA I+EW SK Sbjct: 3 SSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVRSK 62 Query: 64 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 123 ++V ++K+A +D LP V AAQ AG FD AY+GY DK + YDPT RPW Sbjct: 63 RVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRML--ALHPMPAGYDPTARPW 120 Query: 124 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 183 Y+QA + +PVLTAPY A+TGKL+VTFA+ V + AV +DV LD VV V IKP Sbjct: 121 YKQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKP 180 Query: 184 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 243 TP+S+AF+ G II HPN +L LKP++ LD ++ Q+L M+ G + G R + Sbjct: 181 TPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSAQSL-AGMKQG--GSATIGGIRYL 237 Query: 244 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 303 LF + TDW LVVALD +A ++ A++ S V+AVL V +A++L I+RLL RL Sbjct: 238 LFTQPIANTDWSLVVALDYREATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLG 297 Query: 304 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 363 VV+ A+EEIA GDGDLTRRLDT G+ DEL +I AFN F DKI ++DIR AS ++ + Sbjct: 298 VVRNAMEEIASGDGDLTRRLDTSGK-DELAQISRAFNHFADKISRTLLDIRRASESVKVS 356 Query: 364 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 423 S +IASGNMDLS RTE QA SLE+TA+AME+LTS+V+ NADNA QANQL+ SAS +A G Sbjct: 357 SSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHG 416 Query: 424 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 483 G +V QVV TM+ IN SS+KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 417 GQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 476 Query: 484 SEVRSLAQR 492 SEVRSLAQR Sbjct: 477 SEVRSLAQR 485 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/488 (43%), Positives = 311/488 (63%), Gaps = 1/488 (0%) Query: 5 SLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSKK 64 S++ R++ +++ ++ + +F + ++ +A + I EW ++ Sbjct: 4 SIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVAART 63 Query: 65 LVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPWY 124 + + + ADP+ +K Q +GGF + LG DK A S YDPT RPWY Sbjct: 64 AMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTARPWY 123 Query: 125 QQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKPT 184 +QA +PVLT PYT +T K +V+F V ++GQ A V AA + LD V V +I PT Sbjct: 124 KQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSIHPT 183 Query: 185 PNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQML 244 P S+AFL D G ++AHP+ + KP + +A +TP+ L+ +V L+G +++ Sbjct: 184 PASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAAKLV 243 Query: 245 FVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLTV 304 + GT+W L++A+D+AD A L S+ + VLV ++AA ++ + + + RL+ Sbjct: 244 KGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQRLSR 303 Query: 305 VQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAAS 364 V+ A++ ++ G+GDLT RL G SDE+ +I +FN FV++I ++ D+R +S T+ +S Sbjct: 304 VRRAMDNLSSGNGDLTLRLTEDG-SDEVTQISRSFNTFVNQITGILQDVRRSSDTVKISS 362 Query: 365 RDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGG 424 +IA+GN DLS RTE QA +LE+TA+AME+LTS+V+ N++NA +AN+L+ +AS+IA QGG Sbjct: 363 TEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQGG 422 Query: 425 TMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 484 +V VV TM INASS++I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS Sbjct: 423 EVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 482 Query: 485 EVRSLAQR 492 EVRSLAQR Sbjct: 483 EVRSLAQR 490 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 357 bits (915), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 220/494 (44%), Positives = 306/494 (61%), Gaps = 7/494 (1%) Query: 4 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 63 +SLR R+I +V+ ++L N+L AR + D + AA I +W K Sbjct: 3 SSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLAGK 62 Query: 64 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 123 ++ S+++ + +DP +K Q AGGF +GY DK A F+ + YDPT RPW Sbjct: 63 SKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTRPW 122 Query: 124 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 183 Y+ + +PV PY S S G LLV A+ V +DG + AV DV LD+VV ++ +I P Sbjct: 123 YKGVLQAGKPV-ALPYVSTS-GLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHP 180 Query: 184 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAM--RTGVHQDVALDGRR 241 TP+S+ L + G+IIAHP+ +LR K ++L + + A + VH + +DGR Sbjct: 181 TPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVH--IVVDGRE 238 Query: 242 QMLFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGR 301 +++ V V GTDW +VVA+D+ +A A + A+L SS + V V + A+L+ A+ + R Sbjct: 239 KLVRVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRR 298 Query: 302 LTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIH 361 L + A+ I G GDLT+RL HGR DE+ I +FN FV K++ VM DIRDA T+ Sbjct: 299 LGQISAAMTAIGSGSGDLTQRLPDHGR-DEVAIIAQSFNAFVAKLQSVMRDIRDAGETVR 357 Query: 362 AASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIAT 421 AS +IA+ N DLS RTES A+SLEQTAA+M +++++V +A A +A+Q S +A+ IA+ Sbjct: 358 VASDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIAS 417 Query: 422 QGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 481 QGG +V V TM I S +I DIISVIDGIAFQTNILALNAAVE+ARAGEQGRGFAV Sbjct: 418 QGGKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAV 477 Query: 482 VASEVRSLAQRGHG 495 VA EVR+LAQR G Sbjct: 478 VAHEVRNLAQRSAG 491 >gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 657 Score = 232 bits (592), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 137/261 (52%), Positives = 187/261 (71%), Gaps = 10/261 (3%) Query: 236 ALDGRRQMLFVARVGGTDWLLV--VALDRAD-ALASLSAMLVSSGVMAVLVTVLAALVLG 292 A DGR+++L G W++ A+D ++S+ + + G++ + VLAA +L Sbjct: 295 AADGRKKILAFTYYPGWHWVIAGEAAVDEITREVSSMRNLYIGLGLL--FLAVLAA-ILT 351 Query: 293 ALISRLLGR-LTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMI 351 +++R++ R L V A + IA GD LT RL H SDE+GR+ AFN + V+ Sbjct: 352 VMVNRMVSRPLDAVCQAADRIASGD--LTTRLHVHS-SDEIGRLMGAFNGISMGLSEVVS 408 Query: 352 DIRDASHTIHAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQ 411 +R + I+ A+ +IASGN++LS RTE QA +LE+TA+AME+LTS+V+ NA NA QA++ Sbjct: 409 SVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEETASAMEELTSTVKQNAANAEQADE 468 Query: 412 LSQSASQIATQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAAR 471 LS +AS++A+ GG +V QVVQTM+ IN+SSQ+IVDIISVIDGIAFQTNILALNAAVEAAR Sbjct: 469 LSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQTNILALNAAVEAAR 528 Query: 472 AGEQGRGFAVVASEVRSLAQR 492 AGEQGRGFAVVA+EVR+LAQR Sbjct: 529 AGEQGRGFAVVATEVRTLAQR 549 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,374,873 Number of extensions: 47964 Number of successful extensions: 519 Number of sequences better than 1.0e-08: 72 Number of HSP's gapped: 465 Number of HSP's successfully gapped: 72 Length of query: 606 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 515 Effective length of database: 1,188,985 Effective search space: 612327275 Effective search space used: 612327275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)