BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0001.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310315|ref|YP_003774407.1| cysteine synthase B protein [He...   620   e-179

>gi|300310315|ref|YP_003774407.1| cysteine synthase B protein
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  620 bits (1598), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/300 (100%), Positives = 300/300 (100%)

Query: 8   MSYPTIESTIGNTPLILLPRIGGEEAKRRNNLILGKLEGNNPAGSVKDRAAFSMITRAEA 67
           MSYPTIESTIGNTPLILLPRIGGEEAKRRNNLILGKLEGNNPAGSVKDRAAFSMITRAEA
Sbjct: 1   MSYPTIESTIGNTPLILLPRIGGEEAKRRNNLILGKLEGNNPAGSVKDRAAFSMITRAEA 60

Query: 68  RGQIKPGDTLIEATSGNTGIALAMVAAMRGYKMILLMPENLSEERRQSMAAYGAKIVLTP 127
           RGQIKPGDTLIEATSGNTGIALAMVAAMRGYKMILLMPENLSEERRQSMAAYGAKIVLTP
Sbjct: 61  RGQIKPGDTLIEATSGNTGIALAMVAAMRGYKMILLMPENLSEERRQSMAAYGAKIVLTP 120

Query: 128 KSGGMEYARDLAEQMQKNGEGLILDQFANPDNPLAHYETTGPEIWRDTKGSITHFVSAMG 187
           KSGGMEYARDLAEQMQKNGEGLILDQFANPDNPLAHYETTGPEIWRDTKGSITHFVSAMG
Sbjct: 121 KSGGMEYARDLAEQMQKNGEGLILDQFANPDNPLAHYETTGPEIWRDTKGSITHFVSAMG 180

Query: 188 TTGTIMGVAQYLKEQNAQVQIVGAQPEEGSSIPGIRKWPEAYLPKIFDRSRVDQIESVSQ 247
           TTGTIMGVAQYLKEQNAQVQIVGAQPEEGSSIPGIRKWPEAYLPKIFDRSRVDQIESVSQ
Sbjct: 181 TTGTIMGVAQYLKEQNAQVQIVGAQPEEGSSIPGIRKWPEAYLPKIFDRSRVDQIESVSQ 240

Query: 248 ADAENMARKLAVTEGVFCGISAAGACEVAVRLSHQLENATIVFIVCDRGDRYLSTGVFPA 307
           ADAENMARKLAVTEGVFCGISAAGACEVAVRLSHQLENATIVFIVCDRGDRYLSTGVFPA
Sbjct: 241 ADAENMARKLAVTEGVFCGISAAGACEVAVRLSHQLENATIVFIVCDRGDRYLSTGVFPA 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 940,235
Number of extensions: 38714
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)