BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0089.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312791|ref|YP_003776883.1| transcription regulator protein...   374   e-105
gi|300312793|ref|YP_003776885.1| TetR family transcription regul...    95   3e-21

>gi|300312791|ref|YP_003776883.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  374 bits (959), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/190 (99%), Positives = 189/190 (99%)

Query: 3   MTNKLPLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFP 62
           MTNKLPLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFP
Sbjct: 1   MTNKLPLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFP 60

Query: 63  TREALLAATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLK 122
           TREALLAATNDERLMALTEASRRRDDKLDPD SVRAFIKDLVAHACHYRGLAAALGTVLK
Sbjct: 61  TREALLAATNDERLMALTEASRRRDDKLDPDASVRAFIKDLVAHACHYRGLAAALGTVLK 120

Query: 123 SGTPGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLT 182
           SGTPGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLT
Sbjct: 121 SGTPGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLT 180

Query: 183 DLFLDGVGVR 192
           DLFLDGVGVR
Sbjct: 181 DLFLDGVGVR 190


>gi|300312793|ref|YP_003776885.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score = 95.1 bits (235), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 4/162 (2%)

Query: 15  LRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTREALLAATNDE 74
           +RADA +N + +L  A  VF+E+G+DASL DIA+RA+VG+GTLYR FPTREALL A    
Sbjct: 1   MRADAKKNYDHLLNVARTVFMEQGSDASLRDIARRAEVGLGTLYRHFPTREALLEALLRS 60

Query: 75  RLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLKSGTPGCRASGEE 134
              AL E +       D   ++  ++++++A    +RG+ A + +V++       AS   
Sbjct: 61  SFEALAERADELQAADDSAAALMEWLQEIIAFTHEHRGVIAPMVSVIEDHESALHASCVS 120

Query: 135 AR----RLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGS 172
            R     LL RAQ  G  R D+   +L  ++ A++   EQ S
Sbjct: 121 LRAAGAALLSRAQADGKARADLDGAELFDLIAALAWLREQPS 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 550,636
Number of extensions: 21161
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)