BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0084.p
         (358 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312796|ref|YP_003776888.1| 2-nitropropane dioxygenase [Her...   710   0.0  
gi|300312741|ref|YP_003776833.1| 2-nitropropane dioxygenase [Her...   189   2e-49

>gi|300312796|ref|YP_003776888.1| 2-nitropropane dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/358 (98%), Positives = 356/358 (99%)

Query: 1   MPRSLSTPLTRKFGIDFPIVQGPMNGGSTPEMVAAVSNAGGIGALAAANFDVQTMRTKVN 60
           MPRSLSTPLTRKFGIDFPIVQGPMNGGSTPEMVAAVSNAGGIGALAAANFDVQTMRTKVN
Sbjct: 1   MPRSLSTPLTRKFGIDFPIVQGPMNGGSTPEMVAAVSNAGGIGALAAANFDVQTMRTKVN 60

Query: 61  AIRALTAKPFCVNLFVLETPAPTPGEIRDALDRLQPIRAELGLPPAAAPERYCEEFREQL 120
           AIR+LT KPFCVNLFVLETPAPTPGEIRDALDRLQPIRAELGLPPAAAPERYCEEFREQL
Sbjct: 61  AIRSLTTKPFCVNLFVLETPAPTPGEIRDALDRLQPIRAELGLPPAAAPERYCEEFREQL 120

Query: 121 DALVALKAPVASFTFGLLDAASIERLHAAGSLVIGTATNVAEALAWQANGADAICAQGAE 180
           DAL+ALKAPVASFTFGLLDAASIERLHAAGSLVIGTATNVAEALAWQANGADAICAQGAE
Sbjct: 121 DALIALKAPVASFTFGLLDAASIERLHAAGSLVIGTATNVAEALAWQANGADAICAQGAE 180

Query: 181 AGGHRGTFIGHPDASMIGTLALVPQIVDAVALPVIAAGGIMDGRGIAAALTLGAQAAQLG 240
           AGGHRGTFIGHPDASMIGTLALVPQIVDAVALPVIAAGGIMDGRGIAAALTLGAQAAQLG
Sbjct: 181 AGGHRGTFIGHPDASMIGTLALVPQIVDAVALPVIAAGGIMDGRGIAAALTLGAQAAQLG 240

Query: 241 TAFLMTAESPIHAAWQEKIRLSTDTSTRTTRTFTGRPARGILNDFMQRMGRYEQELPAYP 300
           TAFLMTAESPIHAAWQEKIRLSTDTSTRTTRTFTGRPARGILNDFM RMGRYEQELPAYP
Sbjct: 241 TAFLMTAESPIHAAWQEKIRLSTDTSTRTTRTFTGRPARGILNDFMLRMGRYEQELPAYP 300

Query: 301 VQHALTTEIRKAAGQANRPEFMSLWAGQAAGMSRRRAEAIPAAELVRVLVAETQAALA 358
           VQHALTTEIRKAAGQANRPEFMSLWAGQAAGMSRRRAEAIPAAELVRVLVAETQAALA
Sbjct: 301 VQHALTTEIRKAAGQANRPEFMSLWAGQAAGMSRRRAEAIPAAELVRVLVAETQAALA 358


>gi|300312741|ref|YP_003776833.1| 2-nitropropane dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  189 bits (481), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 148/353 (41%), Positives = 193/353 (54%), Gaps = 8/353 (2%)

Query: 7   TPLTRKFGIDFPIVQGPMNGGSTPEMVAAVSNAGGIGALAAANFDVQTMRTKVNAIRALT 66
           TPL ++ G+  PI+Q PM G ST  M AA SNAG +G+LA    + +  R  +  + ALT
Sbjct: 5   TPLMQRLGLAHPIIQAPMAGSSTVVMAAAASNAGALGSLALGASNAEQAREALAQLHALT 64

Query: 67  AKPFCVNLFVLETPAPTPGEIRDALDRLQPIRAELGLPPAAAPERYCEEFR--EQLDALV 124
            KP+ +N+F  +         R  L  LQP+  E G   AA  +   + F    Q+  +V
Sbjct: 65  EKPYNINVFCHQPAVLDSERDRAWLAHLQPLLDEFGGRIAAPLKEIYQSFNADTQMQQVV 124

Query: 125 ALKAP-VASFTFGLLDAASIERLHAAGSLVIGTATNVAEALAWQANGADAICAQGAEAGG 183
              AP V SF FGL  A  I  L  AG L++ TATN+ EA   +A G DAI AQG EAGG
Sbjct: 125 LEHAPAVVSFHFGLPPADVIGALRQAGILLMATATNLDEARQIEAAGLDAIVAQGFEAGG 184

Query: 184 HRGTFIGHPDASMIGTLALVPQIVDAVALPVIAAGGIMDGRGIAAALTLGAQAAQLGTAF 243
           HRG F    D   IG+ AL+  +V    LPVIAAGGIMDG GIAAAL LGAQA Q+GTAF
Sbjct: 185 HRGIFDPTKD-EQIGSFALLRLLVQHTRLPVIAAGGIMDGHGIAAALQLGAQAVQMGTAF 243

Query: 244 LMTAESPIHAAWQEKIRLSTDTSTRTTRTFTGRPARGILNDFMQRMGRYEQELPAYPVQH 303
           L+T ES  +A+++  ++      TR T   +GRPARGI+N FM+ +              
Sbjct: 244 LLTRESNANASYRALLKSPRAQHTRVTAAISGRPARGIVNRFMEEIDTPAAPPIPAYPAA 303

Query: 304 ALT-TEIRKAAGQANRPEFMSLWAGQAAGMSRRRAEAIPAAELVRVLVAETQA 355
                ++   A   +  EF + WAGQ A + R   +    AELV +LV E QA
Sbjct: 304 YDAGKQLHALAAARDVHEFGAHWAGQGAALIR---DGYTVAELVHLLVQEWQA 353


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,001,118
Number of extensions: 37598
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,212,660
Effective search space: 329843520
Effective search space used: 329843520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)