BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0083.p (376 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312797|ref|YP_003776889.1| transcription regulator protein... 730 0.0 gi|300312798|ref|YP_003776890.1| AraC family transcription regul... 72 8e-14 gi|300313081|ref|YP_003777173.1| transcription regulator protein... 68 1e-12 gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 67 3e-12 gi|300313912|ref|YP_003778004.1| AraC family transcription regul... 64 1e-11 >gi|300312797|ref|YP_003776889.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 367 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/367 (99%), Positives = 366/367 (99%) Query: 10 MTAKLATAAIVVVSAGSHAVSANADVAPPRPAKRKRPLVAIVADNIGTETTDLMIPHAIL 69 MTAKLATAAIVVVSAGSHAVSANADVAPPRPAKRKRPLVAIVADNIGTETTDLMIPHAIL Sbjct: 1 MTAKLATAAIVVVSAGSHAVSANADVAPPRPAKRKRPLVAIVADNIGTETTDLMIPHAIL 60 Query: 70 TRSGVADVVVVSPLAGSITLMPALSMTSQQTLDAFDAMHPEGADYVIVPAFHGEGDARII 129 TRSG ADVVVVSPLAGSITLMPALSMTSQQTLDAFDAMHPEGADYVIVPAFHGEGDARII Sbjct: 61 TRSGAADVVVVSPLAGSITLMPALSMTSQQTLDAFDAMHPEGADYVIVPAFHGEGDARII 120 Query: 130 AWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIRDRRYV 189 AWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIRDRRYV Sbjct: 121 AWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIRDRRYV 180 Query: 190 VDRSVMTTTGVTASIPASLAIVEAIAGAAAARRLAAQLGLAGYSAQHESAGFQLEARHLW 249 VDRSVMTTTGVTASIPASLAIVEAIAGAAAARRLAAQLGLAGYSAQHESAGFQLEARHLW Sbjct: 181 VDRSVMTTTGVTASIPASLAIVEAIAGAAAARRLAAQLGLAGYSAQHESAGFQLEARHLW 240 Query: 250 RVIANRAAFYLHEEVRILVEPGVDGIALALTADPWSRTYRSQAVLIAQQSEVMSQDGLLL 309 RVIANRAAFYLHEEVRILVEPGVDGIALALTADPWSRTYRSQAVLIAQQSEVMSQDGLLL Sbjct: 241 RVIANRAAFYLHEEVRILVEPGVDGIALALTADPWSRTYRSQAVLIAQQSEVMSQDGLLL 300 Query: 310 HAQPVQADADKNSKASGLTLTLAGDIPPAAHLERSLGAISQRYGRSTADLVALQLEYAWR 369 HAQPVQADADKNSKASGLTLTLAGDIPPAAHLERSLGAISQRYGRSTADLVALQLEYAWR Sbjct: 301 HAQPVQADADKNSKASGLTLTLAGDIPPAAHLERSLGAISQRYGRSTADLVALQLEYAWR 360 Query: 370 DLQGING 376 DLQGI+G Sbjct: 361 DLQGISG 367 >gi|300312798|ref|YP_003776890.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 16/208 (7%) Query: 33 ADVAPPRPAKRKRPLVAIVADNIGTETTDLMIPHAILTRS-----GVADVVVVSPLAGSI 87 +D P RP+ V +A + G E DLM P + +R+ G + V S + Sbjct: 5 SDFLPHRPSHLAARTVVFIAFD-GAEPLDLMGPIGVFSRAEELAPGSYALRVASVDGALL 63 Query: 88 TLMPALSMTSQQTLDAFDAMHPEGADYVIVPAFHGEG------DARIIAWIKKQFAGDAF 141 LS+ L + + D V+V H + + ++ W+ ++ Sbjct: 64 RTRSPLSLAGIVPLSSIEGR----LDTVLVAGGHEQAIHQAATEVALVEWLNRRGRQARR 119 Query: 142 IAGICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIRDRRYVVDRSVMTTTGVT 201 I IC GA VLG AGLLDGR TTHW A+D L+ P + D Y +D + T+ GVT Sbjct: 120 IGSICTGAFVLGAAGLLDGRYVTTHWAAVDLLQQYFPKAKVDPDAIYRIDGPICTSAGVT 179 Query: 202 ASIPASLAIVEAIAGAAAARRLAAQLGL 229 I +LA+V G A +A L L Sbjct: 180 TGIDLALALVRDDLGQEIASAIARDLVL 207 >gi|300313081|ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 8/105 (7%) Query: 144 GICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIRDRRYVVDRSVMTTTGVTAS 203 GIC GA VL GLLDG+ ATTHW L+ HP ++ DR Y D +V T+ G++A Sbjct: 104 GICTGAFVLAATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAG 163 Query: 204 IPASLAIVEAIAGAAAARRLAAQL--------GLAGYSAQHESAG 240 I +LA++E G AR +A +L G + +SA E G Sbjct: 164 IDLALALIEDDHGVELARSVARELVVYHRRPGGQSQFSALQEMDG 208 >gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 57/103 (55%) Query: 125 DARIIAWIKKQFAGDAFIAGICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIR 184 DA ++AWI++ I +C GA L +AG+LDG TTHW +L+ +P L+ Sbjct: 97 DAALVAWIRQHAQAAVRICSVCTGAFHLAEAGVLDGLRVTTHWDWAQELQRRYPALQVDA 156 Query: 185 DRRYVVDRSVMTTTGVTASIPASLAIVEAIAGAAAARRLAAQL 227 D Y+ + T+ GVTA I +LA+VE G A+A A QL Sbjct: 157 DPIYIRQGRIWTSAGVTAGIDLALALVEQDLGHASAIATARQL 199 >gi|300313912|ref|YP_003778004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 4/99 (4%) Query: 142 IAGICEGAKVLGKAGLLDGRDATTHWYAIDDLRSAHPTLRWIRDRRYVVDRSVMTTTGVT 201 IAGIC G VL +AGLL R ATTHW ++ P ++ DR Y+VD + T+ G+T Sbjct: 100 IAGICTGGFVLAEAGLLARRRATTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMT 159 Query: 202 ASIPASLAIVEAIAGAAAARRLAAQLGL----AGYSAQH 236 A + +LA+V G AAR +A +L + AG +QH Sbjct: 160 AGLDLALAMVGKDLGEEAARSVARKLVMHQHRAGGQSQH 198 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,026,931 Number of extensions: 40647 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 5 Length of query: 376 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 289 Effective length of database: 1,207,925 Effective search space: 349090325 Effective search space used: 349090325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)