BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0078.p
         (736 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312801|ref|YP_003776893.1| hypothetical protein Hsero_3506...  1515   0.0  

>gi|300312801|ref|YP_003776893.1| hypothetical protein Hsero_3506
           [Herbaspirillum seropedicae SmR1]
          Length = 736

 Score = 1515 bits (3922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/736 (100%), Positives = 736/736 (100%)

Query: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60
           MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN
Sbjct: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60

Query: 61  TRNISTENIRLSQNNIVDPENRYQQTFKIQVELPADIEEADRRGILRSIERCTVKKVVQQ 120
           TRNISTENIRLSQNNIVDPENRYQQTFKIQVELPADIEEADRRGILRSIERCTVKKVVQQ
Sbjct: 61  TRNISTENIRLSQNNIVDPENRYQQTFKIQVELPADIEEADRRGILRSIERCTVKKVVQQ 120

Query: 121 GPEFVIEEVESLDADAQSLLTLKPEAGVSTHILGKDLPLEQTIANMSGLLAELGIKIEIA 180
           GPEFVIEEVESLDADAQSLLTLKPEAGVSTHILGKDLPLEQTIANMSGLLAELGIKIEIA
Sbjct: 121 GPEFVIEEVESLDADAQSLLTLKPEAGVSTHILGKDLPLEQTIANMSGLLAELGIKIEIA 180

Query: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGED 240
           SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGED
Sbjct: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGED 240

Query: 241 IANAEFVHYPNERWFKPGRGDKLPKEILDAYCLGIYNADGELRASHLVDTNSGNAERGIC 300
           IANAEFVHYPNERWFKPGRGDKLPKEILDAYCLGIYNADGELRASHLVDTNSGNAERGIC
Sbjct: 241 IANAEFVHYPNERWFKPGRGDKLPKEILDAYCLGIYNADGELRASHLVDTNSGNAERGIC 300

Query: 301 SLPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKREILEGEI 360
           SLPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKREILEGEI
Sbjct: 301 SLPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKREILEGEI 360

Query: 361 CLPDVPQEVLAKYPGIVAGIQGLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF 420
           CLPDVPQEVLAKYPGIVAGIQGLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF
Sbjct: 361 CLPDVPQEVLAKYPGIVAGIQGLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF 420

Query: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF 480
           GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF
Sbjct: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF 480

Query: 481 FSAKPHYEFVEWDFSSQGDHANAEEAATLFAILEDMGKEAYVAVYDQLGATACRILVPGY 540
           FSAKPHYEFVEWDFSSQGDHANAEEAATLFAILEDMGKEAYVAVYDQLGATACRILVPGY
Sbjct: 481 FSAKPHYEFVEWDFSSQGDHANAEEAATLFAILEDMGKEAYVAVYDQLGATACRILVPGY 540

Query: 541 SEVYPVEDLIWDNTNKALLFRADILNLHRLDDEALAALLDRLENNELDEYSDIATLIGID 600
           SEVYPVEDLIWDNTNKALLFRADILNLHRLDDEALAALLDRLENNELDEYSDIATLIGID
Sbjct: 541 SEVYPVEDLIWDNTNKALLFRADILNLHRLDDEALAALLDRLENNELDEYSDIATLIGID 600

Query: 601 FDENTVWGQLTVLELKLLIHLALQQFEEAHELVGAFLQYNDNSVERGLFYQALNVVLEVE 660
           FDENTVWGQLTVLELKLLIHLALQQFEEAHELVGAFLQYNDNSVERGLFYQALNVVLEVE
Sbjct: 601 FDENTVWGQLTVLELKLLIHLALQQFEEAHELVGAFLQYNDNSVERGLFYQALNVVLEVE 660

Query: 661 LDEELALEDYETNFRRMFGNERMDAAIGSITGSVRFFGLTPTSMKLEGLDRHQRLLDSYR 720
           LDEELALEDYETNFRRMFGNERMDAAIGSITGSVRFFGLTPTSMKLEGLDRHQRLLDSYR
Sbjct: 661 LDEELALEDYETNFRRMFGNERMDAAIGSITGSVRFFGLTPTSMKLEGLDRHQRLLDSYR 720

Query: 721 KLHKARARFAQAAAAA 736
           KLHKARARFAQAAAAA
Sbjct: 721 KLHKARARFAQAAAAA 736


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,156,406
Number of extensions: 88756
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 644
Effective length of database: 1,184,250
Effective search space: 762657000
Effective search space used: 762657000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)