BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0076.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312804|ref|YP_003776896.1| hypothetical protein Hsero_3509...   522   e-149

>gi|300312804|ref|YP_003776896.1| hypothetical protein Hsero_3509
           [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  522 bits (1345), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/266 (98%), Positives = 264/266 (99%)

Query: 1   LHGAAPSEIDDILADYRNHFDESSASGRSEEATAAALGDPIWLGREHLADLRDEAGGWLG 60
           LHGAAPSEIDDILADYRNHFDESSASGRSEEATAAALGDP+WLGREHLADLRDEAGGWLG
Sbjct: 14  LHGAAPSEIDDILADYRNHFDESSASGRSEEATAAALGDPVWLGREHLADLRDEAGGWLG 73

Query: 61  AVKRFWTGMRQRRQRVGDNTERELAWIPGSRMVIRLPAEVSWRPAEQARAVLRGPAWLIE 120
           AVKRFWTGMRQRRQRVGDNTERELAWIPGSRMVIRLPAEVSWRPAEQARAVLRGPAWLIE
Sbjct: 74  AVKRFWTGMRQRRQRVGDNTERELAWIPGSRMVIRLPAEVSWRPAEQARAVLRGPAWLIE 133

Query: 121 HVRLDGQQLRGRFKWRLFHSNHLRLELEGPAIETWSTVGSADLRLLNVSQAALRLELCGS 180
           HVRLD QQLRGRFKWRLFHSNHLRLELEGPAIETWSTVGSADLRLLNVSQAALRLELCGS
Sbjct: 134 HVRLDSQQLRGRFKWRLFHSNHLRLELEGPAIETWSTVGSADLRLLNVSQAALRLELCGS 193

Query: 181 GDIRVAGRAQHVTANVMGSGEIDLSLLEHLRATVKVVGSGEVKLGPSEEAGLSLQGSGDI 240
           GDIRVAGRAQHVTANVMGSGEIDLSLLEHLRATVKVVGSGEVKLGPSEEA LSLQGSGDI
Sbjct: 194 GDIRVAGRAQHVTANVMGSGEIDLSLLEHLRATVKVVGSGEVKLGPSEEADLSLQGSGDI 253

Query: 241 TLLTRPTTIRTHVLGSGDIRMEGGWR 266
           TLLTRPTTIRTHVLGSGDIRMEGGWR
Sbjct: 254 TLLTRPTTIRTHVLGSGDIRMEGGWR 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 907,107
Number of extensions: 39399
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)