BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0073.p (331 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 683 0.0 gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 140 1e-34 gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 100 2e-22 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 92 4e-20 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 91 2e-19 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/331 (99%), Positives = 330/331 (99%) Query: 1 MHSDHFSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTA 60 MHSDHFSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTA Sbjct: 1 MHSDHFSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTA 60 Query: 61 LHERMVPPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISM 120 LHERMVPPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISM Sbjct: 61 LHERMVPPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISM 120 Query: 121 QRDLFLSQLHEQDDASVRKWLDLSVLQLDAATAGMLRHYFSLAFDLLNTAQGKTVHPISP 180 QRDLFLSQLHEQDDASVRKWLDLSVLQLD ATAGMLRHYFSLAFDLLNTAQGKTVHPISP Sbjct: 121 QRDLFLSQLHEQDDASVRKWLDLSVLQLDPATAGMLRHYFSLAFDLLNTAQGKTVHPISP 180 Query: 181 RALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCR 240 RALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCR Sbjct: 181 RALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCR 240 Query: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALC 300 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALC Sbjct: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALC 300 Query: 301 GFNHPSRFASEYKKMFGVLPSETVLRAVSDA 331 GFNHPSRFASEYKKMFGVLPSETVLRAVSDA Sbjct: 301 GFNHPSRFASEYKKMFGVLPSETVLRAVSDA 331 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 16/310 (5%) Query: 15 DVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMVPPPGQMVI 74 DVDE A LT WEQ Y Q+ G F+G L Q++ RE ++ A+ + P Sbjct: 27 DVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQVWPDAYWF 86 Query: 75 GICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLF---LSQLHE 131 GI + G +NGR +G+D ++ G+ + T E+ GI +QRD ++L Sbjct: 87 GI-EARTTGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQASAARLGC 145 Query: 132 QDDASVRKWLDLSVLQLDAATAGMLRHYFSLAFDLLNTAQGKTVHPISPRALASTVISNV 191 Q D W L +L G L LL A + + + V+ V Sbjct: 146 QPD-----WQRLGQAELLKVDHGGLEDCRQQIAALLAMAGQASGAHAALQLRQEAVL--V 198 Query: 192 ALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCRATHVSRRTLQY 251 AL L+ G + E+ S RR RIV +A ++ AH + + +C A HVSRRTLQY Sbjct: 199 ALLAMLDEGEIEAEAG-ASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRTLQY 257 Query: 252 CFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALCGFNHPSRFASE 311 CFE+ L +SP+ YL++LRLN R + G +IG++AA GF + S+F+ + Sbjct: 258 CFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAV----GSIGDIAAAWGFANFSQFSCD 313 Query: 312 YKKMFGVLPS 321 YKK+FG PS Sbjct: 314 YKKLFGQTPS 323 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/326 (25%), Positives = 140/326 (42%), Gaps = 14/326 (4%) Query: 7 SVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMV 66 S+H +F DV A+ + W+Q Y Q+ +G+ + +L + T RER N + + Sbjct: 4 SIH--RFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGE 61 Query: 67 PPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLFL 126 P Q+ ++ + GR ++ L G +L+ ++ RDLF Sbjct: 62 APRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFE 121 Query: 127 SQLHEQDDAS-VRKWLDLSVLQLDA----ATAGMLRHYFSLAFDLLNTAQGKTVHP-ISP 180 LH+ D + L V+++ A L FS A + + P + Sbjct: 122 EHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQT 181 Query: 181 RALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCR 240 + S++ L + D + R IV+ A I +VC+ Sbjct: 182 LQREQALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVCQ 241 Query: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALC 300 VSRRT+Q F+ + +PL YL+ +RLN RE+ T ++ A+IG++A+ Sbjct: 242 RLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQE------ASIGDIASRW 295 Query: 301 GFNHPSRFASEYKKMFGVLPSETVLR 326 GF H S FA +Y+ +FG LPS+T R Sbjct: 296 GFFHLSHFAEDYQALFGELPSQTARR 321 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 92.4 bits (228), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 139/330 (42%), Gaps = 40/330 (12%) Query: 16 VDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMVPPPGQMVIG 75 +DE L + + Q+ G+ + +L M Q RER++ L +R V PG +V Sbjct: 28 LDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLGHIQIYRERSDKPLLKRGVNWPGSLVFS 87 Query: 76 ICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLFLSQLHE---- 131 + L+GR + +V DG I T ++L+ I + R ++ + Sbjct: 88 FVVQARGRGWLSGRAVDPQASLVADGEALPEIITPAELDLVFIVVDRQWLSERIGDGASR 147 Query: 132 QDDASVRKWLDLSVLQLDAATAGMLRHYFSLAFDLLNTAQGKTVHPISPRALASTVISNV 191 Q S R DL A +LR F L Q + P S I + Sbjct: 148 QIAGSAR---DLRCFAAWHEHALVLRRLFPLL-----PGQARLGQP-------SPSIGHC 192 Query: 192 ALALSLNHGSNDLES---------TLPSRQRRE--------RIVQNAIDYMRAHAGEEIG 234 ALA + G L L S R E R++ A MR A E Sbjct: 193 ALAPRSSAGGGSLAEDMVLEALLDVLGSVHRVEALRETDHKRLIDQARRLMRGDAPERAT 252 Query: 235 ILDVCRATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIG 294 + V VSRR LQ CF + I +++++A RLN ++++ E R +IG Sbjct: 253 MTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLN----QVRKALVEARRAGLEVSIG 308 Query: 295 NLAALCGFNHPSRFASEYKKMFGVLPSETV 324 ++AA GF H SRFA++Y+ MFG LPS+T+ Sbjct: 309 DIAADWGFWHLSRFAADYRDMFGELPSKTL 338 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/324 (25%), Positives = 145/324 (44%), Gaps = 21/324 (6%) Query: 11 VQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMVPPPG 70 ++F DV E A+ ++ W Y Q+ +G+ + +L + T RER N + ++ P Sbjct: 6 LRFQDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQGEAPRE 65 Query: 71 QMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLFLSQL- 129 Q+ ++ + GR + + ++ L G +L I+ R LF +QL Sbjct: 66 QVCFAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALFEAQLE 125 Query: 130 HEQDDASVRKWLDLSVLQ-----LDAATAGMLRHYFSLAFDLLNTAQGKTVHPISPRALA 184 H + + V++ L A +L ++ + +L+ G HP + L Sbjct: 126 HTASPERIVALMKQPVVKVASQDLHACRERLLNIFY---WAMLSIEDGHGQHPQHEQELE 182 Query: 185 STVISNVALALSL-NHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCRATH 243 ++++ + LS + G++ ST+ R IV A I +VC Sbjct: 183 LSLLAELLALLSAPDCGASRQISTI-----RSYIVDKLHRQTMNDAINVPSIFEVCEQMQ 237 Query: 244 VSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALCGFN 303 VSRRT+Q F+ + +P YL+ +RLN R + + E TIG++A+ GF Sbjct: 238 VSRRTVQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSAEQ------ITIGDIASRWGFF 291 Query: 304 HPSRFASEYKKMFGVLPSETVLRA 327 H S FA +Y+ +F LPS+T+ R+ Sbjct: 292 HLSHFAEDYRALFCELPSQTIRRS 315 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,026,507 Number of extensions: 41716 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 5 Length of query: 331 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 245 Effective length of database: 1,212,660 Effective search space: 297101700 Effective search space used: 297101700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)