BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0069.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312824|ref|YP_003776916.1| plant photosystem II stability/...   650   0.0  
gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum ...   329   2e-91

>gi|300312824|ref|YP_003776916.1| plant photosystem II
           stability/assembly factor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/331 (99%), Positives = 330/331 (99%)

Query: 1   MTFFKTSAIPLSLALLAASAAGAVFAQAAAPVTLAAARTDAHALHNMMLGAARAGSRIVA 60
           MTFFKTSAIPLSLALLAASAAGAVFAQAAAPVTLAAARTDAHALHNMMLGAARAGSRIVA
Sbjct: 1   MTFFKTSAIPLSLALLAASAAGAVFAQAAAPVTLAAARTDAHALHNMMLGAARAGSRIVA 60

Query: 61  VGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADASQGWAAGHGGVILHTADGGKTWA 120
           VGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADASQGWAAGHGGVILHTADGGKTWA
Sbjct: 61  VGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADASQGWAAGHGGVILHTADGGKTWA 120

Query: 121 LQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQDGGKSWQQVKLPTAPGQQRADLNL 180
           LQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQDGGKSWQQVKLP APGQQRADLNL
Sbjct: 121 LQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQDGGKSWQQVKLPAAPGQQRADLNL 180

Query: 181 LHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGTKASLWSGVSTASGAIVVGGLGGK 240
           LHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGTKASLWSGVSTASGAIVVGGLGGK
Sbjct: 181 LHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGTKASLWSGVSTASGAIVVGGLGGK 240

Query: 241 LLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSLSGALLASDDDGRQWRIKATARDA 300
           LLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSLSGALLASDDDGRQWRIKATARDA
Sbjct: 241 LLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSLSGALLASDDDGRQWRIKATARDA 300

Query: 301 LTTLELQEGRAERPLAYGKGGQAKLEVSASR 331
           LTTLELQEGRAERPLAYGKGGQAKLEVSASR
Sbjct: 301 LTTLELQEGRAERPLAYGKGGQAKLEVSASR 331


>gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  329 bits (843), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/325 (55%), Positives = 223/325 (68%), Gaps = 8/325 (2%)

Query: 1   MTFFKTSAIPLSLALLAASAAGAVFAQAAAPVTLAAARTDAHALHNMMLGAARAGSRIVA 60
           M  +KT    L LAL   S   A  AQ   PV + AA  D  A   MML AA AG R+VA
Sbjct: 1   MNVWKTL---LWLALAGCSTLAA--AQGMEPVPVRAAVADRFADRAMMLDAALAGERVVA 55

Query: 61  VGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADASQGWAAGHGGVILHTADGGKTWA 120
           VGA G +ILSDDGG  +RQA QVPVD TLT+VSF D  +GWA GHGGV++HTADGG+TW 
Sbjct: 56  VGARGEVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQ 115

Query: 121 LQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQDGGKSWQQVKLPTAPGQQRADLNL 180
           LQRS T VDQPLF+++F +   GWAAGLWSLLL T+DGGK+W  + LP A G +R+DLNL
Sbjct: 116 LQRSATDVDQPLFTVYFRDREHGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNL 175

Query: 181 LHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGTKASLWSG-VSTASGAIVVGGLGG 239
           L  FPG    L++AAEQG L+RS D GQHW+ LATG+KASLWSG V+  +GA++V GLGG
Sbjct: 176 LRFFPGSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGG 235

Query: 240 KLLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSLSGALLASDDDGRQWRIKATARD 299
           KLLRS DGG  WQ +A PTSGSIT +++    + A+SL G +L S D+G  W++  +A  
Sbjct: 236 KLLRSTDGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQ 295

Query: 300 ALTTLELQEGRAERPLAYGKGGQAK 324
            LTT+ +   R  + L + K G  K
Sbjct: 296 GLTTILVN--RLGQVLPFSKEGVLK 318


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,053,807
Number of extensions: 47285
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)