BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0067.p
         (763 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312826|ref|YP_003776918.1| primary-amine oxidase [Herbaspi...  1561   0.0  

>gi|300312826|ref|YP_003776918.1| primary-amine oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score = 1561 bits (4041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 760/763 (99%), Positives = 760/763 (99%)

Query: 1   MTSNRFRSRPLLKAALTTLTAAGLSTALLAPLPAGAHGAAAHMLPLKKTMEDFGATVRWD 60
           MTSNRFRSRPLLKAALTTLTAAGLSTALL PLPA AHGAAAHMLPLKKTMEDFGATVRWD
Sbjct: 13  MTSNRFRSRPLLKAALTTLTAAGLSTALLGPLPAAAHGAAAHMLPLKKTMEDFGATVRWD 72

Query: 61  AYAGLWTIQRNSVTVRVKPRATTALVNGQSVKLPVPLVMKGGQPYVSDEFINTVFAPSLD 120
           AYAGLWTIQRNSVTVRVKPRATTALVNGQSVKLPVPLVMKGGQPYVSDEFINTVFAPSLD
Sbjct: 73  AYAGLWTIQRNSVTVRVKPRATTALVNGQSVKLPVPLVMKGGQPYVSDEFINTVFAPSLD 132

Query: 121 KTFQIEAVPHPLNPLSADEINAALEVLKASGRWQPNYRFTEITLAEPPKEQVWKFALGER 180
           KTFQIEAVPHPLNPLSADEINAALEVLKASGRWQPNYRFTEITLAEPPKEQVWKFALGER
Sbjct: 133 KTFQIEAVPHPLNPLSADEINAALEVLKASGRWQPNYRFTEITLAEPPKEQVWKFALGER 192

Query: 181 GQTIARRADFTLLDGSKVIEGTVDLGQRNVTRWEPKEGVHGMVLVDDFATVQNAMESSPE 240
           GQTIARRADFTLLDGSKVIEGTVDLGQRNVTRWEPKEGVHGMVLVDDFATVQNAMESSPE
Sbjct: 193 GQTIARRADFTLLDGSKVIEGTVDLGQRNVTRWEPKEGVHGMVLVDDFATVQNAMESSPE 252

Query: 241 YAQALAKRGITDIKKVVATPLTVGYFGGKDALQEDARLLKVVSYLDVGDGNYWAHPIENL 300
           YAQALAKRGITDIKKVVATPLTVGYFGGKDALQEDARLLKVVSYLDVGDGNYWAHPIENL
Sbjct: 253 YAQALAKRGITDIKKVVATPLTVGYFGGKDALQEDARLLKVVSYLDVGDGNYWAHPIENL 312

Query: 301 VAVVDLVQKKVIKIEDNGVIPVPMKPTGYDGSGRALVPPPKPLDISEPEGKNYTITGNTL 360
           VAVVDLVQKKVIKIEDNGVIPVPMKPTGYDGSGRALVPPPKPLDISEPEGKNYTITGNTL
Sbjct: 313 VAVVDLVQKKVIKIEDNGVIPVPMKPTGYDGSGRALVPPPKPLDISEPEGKNYTITGNTL 372

Query: 361 RWRNWEMHFKLDSRVGLMFSTVTYNDHGKKRQIMYEGSLGGMIVPYGDPDVGWYFKAYLD 420
           RWRNWEMHFKLDSRVGLMFSTVTYNDHGKKRQIMYEGSLGGMIVPYGDPDVGWYFKAYLD
Sbjct: 373 RWRNWEMHFKLDSRVGLMFSTVTYNDHGKKRQIMYEGSLGGMIVPYGDPDVGWYFKAYLD 432

Query: 421 SGEYGMGTLTSPIERGKDAPDNVVLLDATLADTSGKPRTIPRAIGVFERYAGPEFKHQEY 480
           SGEYGMGTLTSPIERGKDAPDNVVLLDATLADTSGKPRTIPRAIGVFERYAGPEFKHQEY
Sbjct: 433 SGEYGMGTLTSPIERGKDAPDNVVLLDATLADTSGKPRTIPRAIGVFERYAGPEFKHQEY 492

Query: 481 GQPNLSVERRELVIRWISTVGNYDYIFDWVFAENGTIGINAGATGIEAVKGVKSSTMRDA 540
           GQPNLSVERRELVIRWISTVGNYDYIFDWVFAENGTIGINAGATGIEAVKGVKSSTMRDA
Sbjct: 493 GQPNLSVERRELVIRWISTVGNYDYIFDWVFAENGTIGINAGATGIEAVKGVKSSTMRDA 552

Query: 541 SAAEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGQNNSLTEVDPVVLPNTRGGPRSSTM 600
           SAAEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGQNNSLTEVDPVVLPNT GGPRSSTM
Sbjct: 553 SAAEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGQNNSLTEVDPVVLPNTPGGPRSSTM 612

Query: 601 QTVQRTAETEQQAAQKFDASTIRLLSNPNKFNKVGNPVSYQLIPYAGGTHPIAKGANFSP 660
           QTVQRTAETEQQAAQKFDASTIRLLSNPNKFNKVGNPVSYQLIPYAGGTHPIAKGANFSP
Sbjct: 613 QTVQRTAETEQQAAQKFDASTIRLLSNPNKFNKVGNPVSYQLIPYAGGTHPIAKGANFSP 672

Query: 661 DEWLNKRLSFMDRQLWVTRYDPQQRFPEGKYPNRSHEDTGLGAFVKDNQSIVNQDDVVWL 720
           DEWLNKRLSFMDRQLWVTRYDPQQRFPEGKYPNRSHEDTGLGAFVKDNQSIVNQDDVVWL
Sbjct: 673 DEWLNKRLSFMDRQLWVTRYDPQQRFPEGKYPNRSHEDTGLGAFVKDNQSIVNQDDVVWL 732

Query: 721 TTGTTHVARAEEWPIMPTEWVHVLLKPWNFFDETPTLGLNKKK 763
           TTGTTHVARAEEWPIMPTEWVHVLLKPWNFFDETPTLGLNKKK
Sbjct: 733 TTGTTHVARAEEWPIMPTEWVHVLLKPWNFFDETPTLGLNKKK 775


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,412,325
Number of extensions: 105917
Number of successful extensions: 256
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 670
Effective length of database: 1,179,515
Effective search space: 790275050
Effective search space used: 790275050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)