BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0061.p
         (375 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312831|ref|YP_003776923.1| hypothetical protein Hsero_3536...   642   0.0  

>gi|300312831|ref|YP_003776923.1| hypothetical protein Hsero_3536
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/324 (99%), Positives = 323/324 (99%)

Query: 52  MSAGWLAAPVQRIQPAQPARTPGEGASAARPVHLWSAPDHPRALGSRLARQVKLASRYLL 111
           MSAGWLAAPVQRIQPAQPARTPGEGASAARPVHLWSAPDHPRALGSRLARQVKLASRYLL
Sbjct: 1   MSAGWLAAPVQRIQPAQPARTPGEGASAARPVHLWSAPDHPRALGSRLARQVKLASRYLL 60

Query: 112 HPALTRRWLDFWNLSATHRALAVAAPRLLDKVYRPYQSLQLSRAERLALLTSHYDFIIRK 171
           HPALTRRWLDFWNLSATHRALAVAAPRLLDKVYRPYQSLQLSRAERLALLTSHYDFIIRK
Sbjct: 61  HPALTRRWLDFWNLSATHRALAVAAPRLLDKVYRPYQSLQLSRAERLALLTSHYDFIIRK 120

Query: 172 GLAPLVLRAARQAVPVACFAGKSGDRYEVRLAAIDSLTLEGELALHLYHGDQHLFSTAFS 231
           GLAPLVLRAARQAVPVACFAGKSGDRYEVRLAAIDSLTLEGELALHLYHGDQHLFSTAFS
Sbjct: 121 GLAPLVLRAARQAVPVACFAGKSGDRYEVRLAAIDSLTLEGELALHLYHGDQHLFSTAFS 180

Query: 232 VCAQENGWELRVGCLQGPRGQHTRERVRHATRDLFGLRPKALMIRLVRALGVAHGCARVV 291
           VCAQENGWELRVGCLQGPRGQ TRERVRHATRDLFGLRPKALMIRLVRALGVAHGCARVV
Sbjct: 181 VCAQENGWELRVGCLQGPRGQQTRERVRHATRDLFGLRPKALMIRLVRALGVAHGCARVV 240

Query: 292 LVSNAHRVARHHCRREHVHADYDAFWQELGAARRSDGDYELPCDEAVTDINALPSRKRAE 351
           LVSNAHRVARHHCRREHVHADYDAFWQELGAARRSDGDYELPCDEAV+DINALPSRKRAE
Sbjct: 241 LVSNAHRVARHHCRREHVHADYDAFWQELGAARRSDGDYELPCDEAVSDINALPSRKRAE 300

Query: 352 ARQRLALTQQAALAMRCALVRPIH 375
           ARQRLALTQQAALAMRCALVRPIH
Sbjct: 301 ARQRLALTQQAALAMRCALVRPIH 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,131,126
Number of extensions: 48330
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,207,925
Effective search space: 347882400
Effective search space used: 347882400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)