BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0056.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312836|ref|YP_003776928.1| hydrolase or acyltransferase [H...   578   e-166
gi|300313276|ref|YP_003777368.1| 3-oxoadipate enol-lactone hydro...    55   6e-09

>gi|300312836|ref|YP_003776928.1| hydrolase or acyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score =  578 bits (1491), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 285/286 (99%), Positives = 286/286 (100%)

Query: 1   MNARTDATLFADPDLRLLTTRSGSRIPFLSQGSGEPLVFVHGSLCDYRYWKGQVAALSRH 60
           MNARTDATLFADPDLRLLTTRSGSRIPFLSQGSGEPLVFVHGSLCDYRYWKGQVAALSRH
Sbjct: 1   MNARTDATLFADPDLRLLTTRSGSRIPFLSQGSGEPLVFVHGSLCDYRYWKGQVAALSRH 60

Query: 61  FHCISVSLSHYWPGLQDEAGASKEFSWAAHAEEVADLVAALGLGPVHLVGHSRGACVAFH 120
           FHCISVSLSHYWPGLQDEAGASKEFSWAAHAEEVADLVAALGLGPVHLVGHSRGACVAFH
Sbjct: 61  FHCISVSLSHYWPGLQDEAGASKEFSWAAHAEEVADLVAALGLGPVHLVGHSRGACVAFH 120

Query: 121 AARQHPHLVRTLTLADPGGPLQSDSAAEAALPPATQALRARVAELIKAGQTEQGLEMFVD 180
           AARQHPHLVRTLTLADPGGPLQSDSAAEAALPPATQALRARVAELI+AGQTEQGLEMFVD
Sbjct: 121 AARQHPHLVRTLTLADPGGPLQSDSAAEAALPPATQALRARVAELIEAGQTEQGLEMFVD 180

Query: 181 SVSVAGAWSRSPAGFRAMASANAATLPLQFKDALPAYTEEDAAALRCKTLLIGGEKSPRM 240
           SVSVAGAWSRSPAGFRAMASANAATLPLQFKDALPAYTEEDAAALRCKTLLIGGEKSPRM
Sbjct: 181 SVSVAGAWSRSPAGFRAMASANAATLPLQFKDALPAYTEEDAAALRCKTLLIGGEKSPRM 240

Query: 241 YRDNIAALSQWILTAEEHVIAGASHGMNVSHPAAFNRALQAFLEAA 286
           YRDNIAALSQWILTAEEHVIAGASHGMNVSHPAAFNRALQAFLEAA
Sbjct: 241 YRDNIAALSQWILTAEEHVIAGASHGMNVSHPAAFNRALQAFLEAA 286


>gi|300313276|ref|YP_003777368.1| 3-oxoadipate enol-lactone
           hydrolase/4-carboxymuconolactone decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 107/261 (40%), Gaps = 36/261 (13%)

Query: 37  LVFVHGSLCDYRYWKGQVAALSRHFHCISVSLSHYWPGLQDEAGASKEFSWAAHAEEVAD 96
           +V  H    D   W G    L+    C  ++  H   G  ++A     +S A  A++ A 
Sbjct: 77  VVLSHALGTDLMMWDGLANQLA--ADCRVIAYDHRGHGSSEKA--DGLYSMADLADDAAR 132

Query: 97  LVAALGLGPVHLVGHSRGACVAFHAARQHPHLVRTLTLADPGGPLQSDSAAEAALPPAT- 155
           L+  L  GPV  VG S G  V    A +HP LVR L LA+            +A P A  
Sbjct: 133 LLRELDSGPVVWVGLSMGGMVGQELALRHPGLVRALVLAN----------TTSAYPDAAR 182

Query: 156 QALRARVAELIKAGQTEQGLEMFVDSVSVAGAWSRSPAGFRAMASANAA--------TLP 207
           +A + R+A +       +G+E+  D  +V G +     GFR+  +A  A        T  
Sbjct: 183 EAWQQRIATV-----RAEGIEVIAD--AVMGRYFHE--GFRSAQAATVARYRQRLVTTDA 233

Query: 208 LQFKDALPAYTEEDAAA----LRCKTLLIGGEKSPRMYRDNIAALSQWILTAEEHVIAGA 263
           + +     A    D AA    +R  TL+I GE           AL   I  A   VIAGA
Sbjct: 234 VGYVGCCHAVGTVDTAARLGSIRVPTLVIAGELDQGTPVAMAQALVDGISGARLAVIAGA 293

Query: 264 SHGMNVSHPAAFNRALQAFLE 284
           SH   V  PA F   +  F++
Sbjct: 294 SHVSAVEQPALFAELVCGFID 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 911,482
Number of extensions: 36798
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)