BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0053.p
         (469 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312837|ref|YP_003776929.1| hypothetical protein Hsero_3542...   946   0.0  

>gi|300312837|ref|YP_003776929.1| hypothetical protein Hsero_3542
           [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/469 (98%), Positives = 463/469 (98%)

Query: 1   MQATLEEMQAAASASRRYHPNSDPHHDPHGAELLPARIYAQLNVAEPDAAALAQARRYLV 60
           MQATLEEMQAAASASRRYHPNSDPHHDPHGA LLPARIYAQLNVAEPDAAALAQARRYLV
Sbjct: 1   MQATLEEMQAAASASRRYHPNSDPHHDPHGAGLLPARIYAQLNVAEPDAAALAQARRYLV 60

Query: 61  TQLEATQALPCELPPAGQDMAVWMQARAAQVGVAYEAYLQERRAGAPRQYFSGRAHALNF 120
           TQLEATQALPCELPPAGQDMA WMQARAAQVGVAYEAYLQERRAGAPRQYFSGRAHALNF
Sbjct: 61  TQLEATQALPCELPPAGQDMAAWMQARAAQVGVAYEAYLQERRAGAPRQYFSGRAHALNF 120

Query: 121 LLRVAPTKLVDGAWLYSAVKHWRDPVFRPLILTYLEELGDGEVAMNHVSLYRSLLQAHGC 180
           LLRVAPTKLVDGAWLYSAVKHWRDPVFRPLILTYLEELGDGEVAMNHVSLYRSLLQAHGC
Sbjct: 121 LLRVAPTKLVDGAWLYSAVKHWRDPVFRPLILTYLEELGDGEVAMNHVSLYRSLLQAHGC 180

Query: 181 EQADWLSQAHYVQGALQLALGWHGDEFIPEMFGFNLGYEQLPLHLLITAYELNELGIDPY 240
           EQADWLSQAHYVQGALQLALGWHGDEFIPEMFGFNLGYEQLPLHLLITAYELNELGIDPY
Sbjct: 181 EQADWLSQAHYVQGALQLALGWHGDEFIPEMFGFNLGYEQLPLHLLITAYELNELGIDPY 240

Query: 241 YFTLHVTIDNAASGHARKAVDAVLEAAAQWPDREEFLQRMRRGYLLNELGASTLGVIGSF 300
           YFTLHVTIDNAASGHARKAVDAVLEAAAQWPDREEFLQRMRRGYLLNELGASTLGVIGSF
Sbjct: 241 YFTLHVTIDNAASGHARKAVDAVLEAAAQWPDREEFLQRMRRGYLLNELGASTLGVIGSF 300

Query: 301 DLDQEVQRVLADKAAFGRMMHSDYCRIGGKTVNQWLERPEGMRDFLAAMEQGKWILRGEP 360
           DLDQEVQRVLADKAAFGRMMHSDYCRIGGKTVNQWLERPEGMRDFLAAMEQGKWILRGEP
Sbjct: 301 DLDQEVQRVLADKAAFGRMMHSDYCRIGGKTVNQWLERPEGMRDFLAAMEQGKWILRGEP 360

Query: 361 AGHSRFWRLIDAPGGEMFGVFNGYEKQVIREWIETGWDDAPRQPSFRALARGRQGAAEQP 420
           AGHSRFWRLIDAPGGEMFGVFNGYEKQVIREWIETGWDDAPRQPSFRA ARGRQG AEQP
Sbjct: 361 AGHSRFWRLIDAPGGEMFGVFNGYEKQVIREWIETGWDDAPRQPSFRAQARGRQGVAEQP 420

Query: 421 EQPQQEAPSHLDAGLDALVAPLSPACHHLPPGLEATCLFSQCYRTRCIV 469
           EQP QEAPSHLDAGLDALVAPLSPACHHLPPGLEAT LFSQCYRTRCIV
Sbjct: 421 EQPHQEAPSHLDAGLDALVAPLSPACHHLPPGLEATRLFSQCYRTRCIV 469


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,624,542
Number of extensions: 72238
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,198,455
Effective search space: 455412900
Effective search space used: 455412900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)