BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0049.p (541 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p... 978 0.0 gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p... 213 4e-56 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 166 3e-42 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 164 1e-41 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 164 2e-41 >gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/494 (100%), Positives = 494/494 (100%) Query: 1 MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML 60 MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML Sbjct: 1 MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML 60 Query: 61 KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVRTGILPLQDKELMESLERVASQ 120 KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVRTGILPLQDKELMESLERVASQ Sbjct: 61 KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVRTGILPLQDKELMESLERVASQ 120 Query: 121 WRALAQAVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQRAVMNE 180 WRALAQAVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQRAVMNE Sbjct: 121 WRALAQAVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQRAVMNE 180 Query: 181 LPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLTLAAGRHALP 240 LPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLTLAAGRHALP Sbjct: 181 LPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLTLAAGRHALP 240 Query: 241 ANLERARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQFVLVNASFDLM 300 ANLERARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQFVLVNASFDLM Sbjct: 241 ANLERARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQFVLVNASFDLM 300 Query: 301 RDELQAKIPRVRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISAGDLT 360 RDELQAKIPRVRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISAGDLT Sbjct: 301 RDELQAKIPRVRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISAGDLT 360 Query: 361 QHVQINGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKRTEEQ 420 QHVQINGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKRTEEQ Sbjct: 361 QHVQINGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKRTEEQ 420 Query: 421 ASALQQTAASMEELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQGLHASS 480 ASALQQTAASMEELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQGLHASS Sbjct: 421 ASALQQTAASMEELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQGLHASS 480 Query: 481 DRISDIIGVIDGIA 494 DRISDIIGVIDGIA Sbjct: 481 DRISDIIGVIDGIA 494 >gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 668 Score = 213 bits (541), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 181/501 (36%), Positives = 269/501 (53%), Gaps = 11/501 (2%) Query: 1 MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML 60 M L+ +L+ +KFAL+G L +LF VPTTL S + + ++E VEP R LL + Sbjct: 1 MGQLLANLKLWQKFALLGLLGLVLFGVPTTLYFNSTERVIRFKQQEIAGVEPVRRLLRSV 60 Query: 61 KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVRTGI------LPLQDKELMESL 114 + MQQHRG+SA+ L+ GAAD A ++ A +++ + + D + Sbjct: 61 QLMQQHRGMSAVMLN----GAADMAGPRQAKAAEVDQALAALAGALEEVGRDDTRIPVLF 116 Query: 115 ERVASQWRALAQAVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQ 174 + + W + AV+S++IT +S H+ IA DL ++L + ++ + + Sbjct: 117 KNQLAAWTKVRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLI 176 Query: 175 RAVMNELPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLTLAA 234 A +P LTE LG+ RARGA +L + + EER L + +RA+ SARKS Sbjct: 177 NAAFIAMPALTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGV 236 Query: 235 GRHA-LPANLERARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQFVLV 293 +A + L +A + E KL ++ LS P + T ID QF + Sbjct: 237 AANAEIGVKLGSTFEKADRLGNEVMKLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAI 296 Query: 294 NASFDLMRDELQAKIPRVRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEA 353 +++ +L + +R E L + + LA W+ V ITR+ T I +V + Sbjct: 297 GEVTEVLAGQLDTQNAALRREQLTVLGAIFALALLVAWLGVMITRSVTQPILASVAMAGR 356 Query: 354 ISAGDLTQHVQINGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADL 413 ++ DLT G DE A+LL ++ AMTA L +V VR++ E + AS +IA GNADL Sbjct: 357 VADYDLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADL 416 Query: 414 SKRTEEQASALQQTAASMEELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTM 473 S+RTE QAS+L++TA++MEEL STV NA+ ARQA LA A+ +A +GG+VV VVQTM Sbjct: 417 SRRTESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTM 476 Query: 474 QGLHASSDRISDIIGVIDGIA 494 + SS RI DII VIDGIA Sbjct: 477 DEIKTSSRRIVDIISVIDGIA 497 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 166 bits (421), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/183 (51%), Positives = 125/183 (68%), Gaps = 3/183 (1%) Query: 312 RNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISAGDLTQHVQINGSDEV 371 R+ LL L A+ +L AA W++ TR+ T +N AV + E ++AGDLT + + DE Sbjct: 187 RSMLLALGAIEIVLGAALAWLL---TRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDET 243 Query: 372 ARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASM 431 +LL A++ M L +V VR +E++ TAS +IA GN DLS RTE QA +L++TA++M Sbjct: 244 GKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAM 303 Query: 432 EELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQGLHASSDRISDIIGVID 491 E+L STV QNAD ARQA +LA A+ VA QGG VV QVV TM +HASS +I+DIIGVID Sbjct: 304 EQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVID 363 Query: 492 GIA 494 GIA Sbjct: 364 GIA 366 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 164 bits (416), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 125/183 (68%) Query: 312 RNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISAGDLTQHVQINGSDEV 371 R+ L + LL + AL + V + RA + +N+AV + E ++ GDLT ++ +DE Sbjct: 187 RSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDET 246 Query: 372 ARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASM 431 L+ +++AM L +V VR+ ++++ TAS +IA GN DLS RTEEQA +L++TA++M Sbjct: 247 GMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAM 306 Query: 432 EELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQGLHASSDRISDIIGVID 491 EEL +TV QNAD ARQA LA A+ +A QGG VV QVVQTM+G+ SS+RI+DII VID Sbjct: 307 EELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVID 366 Query: 492 GIA 494 GIA Sbjct: 367 GIA 369 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 164 bits (415), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/260 (41%), Positives = 161/260 (61%), Gaps = 17/260 (6%) Query: 247 RAEALKAAEEGFKLADS---AIIRADNLSMPAPEWVATMTRIIDTQ---FVLVNASFDLM 300 +A+AL A F + + A+++A N S A E+V + +I DTQ L A D Sbjct: 117 KAKALDEARIAFDASKADFLALVKAGN-STSADEYV--LRKITDTQNNYLALARAFADSQ 173 Query: 301 RDELQAKIPR------VRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAI 354 +LQA+ + + E+ + C++ +LAA L ++A R+ + +AVR+ E + Sbjct: 174 DAQLQAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMA--RSIVKPLTEAVRVAENV 231 Query: 355 SAGDLTQHVQINGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLS 414 +AGDLT ++ + DE +L+ A++ M L +VS VR +ES+ TAS +IA GN DLS Sbjct: 232 AAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLS 291 Query: 415 KRTEEQASALQQTAASMEELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQ 474 RTE+QA +L++TA++MEE+ STV QNAD ARQA +A A+ +A QGGQ+V +VV TM Sbjct: 292 ARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMD 351 Query: 475 GLHASSDRISDIIGVIDGIA 494 ++ SS +I DIIGVIDGIA Sbjct: 352 EINQSSRKIVDIIGVIDGIA 371 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.127 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,170,182 Number of extensions: 37018 Number of successful extensions: 470 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 405 Number of HSP's successfully gapped: 65 Length of query: 541 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 451 Effective length of database: 1,193,720 Effective search space: 538367720 Effective search space used: 538367720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)