BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0045.p (481 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312843|ref|YP_003776935.1| response regulator containing a... 968 0.0 gi|300310865|ref|YP_003774957.1| response regulator containing a... 291 1e-79 gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspi... 230 2e-61 gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspi... 229 4e-61 gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspi... 186 4e-48 >gi|300312843|ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/481 (99%), Positives = 479/481 (99%) Query: 1 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLS 60 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLS Sbjct: 45 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLS 104 Query: 61 SEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRST 120 SEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRST Sbjct: 105 SEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRST 164 Query: 121 GRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMP 180 GRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMP Sbjct: 165 GRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMP 224 Query: 181 FDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLARE 240 FDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLARE Sbjct: 225 FDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLARE 284 Query: 241 EALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLE 300 EALADWKQQTFVYGAAVLLLLAIIGVFGWRL+GQIELRLRAEDRALQAMGELQMANHRLE Sbjct: 285 EALADWKQQTFVYGAAVLLLLAIIGVFGWRLVGQIELRLRAEDRALQAMGELQMANHRLE 344 Query: 301 MLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDEC 360 MLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDEC Sbjct: 345 MLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDEC 404 Query: 361 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGN 420 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLP TDAEGACAVAEKLRAGIQALELPHRGN Sbjct: 405 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLPGTDAEGACAVAEKLRAGIQALELPHRGN 464 Query: 421 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPMKTAPSDAV 480 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPMKTAPS AV Sbjct: 465 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPMKTAPSGAV 524 Query: 481 S 481 S Sbjct: 525 S 525 >gi|300310865|ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 291 bits (744), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 174/466 (37%), Positives = 262/466 (56%), Gaps = 2/466 (0%) Query: 1 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVG-IAHARLVDLMPMLRRL 59 V L + + + NVA AL +HA ++ D +L + + +D A AR+ M+R + Sbjct: 51 VALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSASARIRTHDFMIRSV 110 Query: 60 SSEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRS 119 +S +PQL L V DE G+ + +S + + DYF +H+ P +G+ + S Sbjct: 111 AS-LPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRSDRPFIGQPMRSHV 169 Query: 120 TGRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRM 179 TG+ + +SRR+NH DGSFAGV++A +D+ +F + Y IG G I L G+L+ R Sbjct: 170 TGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFGLTGGSLILRR 229 Query: 180 PFDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAR 239 P +R + + + + G + S D +R +Q + YP+ VV LA+ Sbjct: 230 PLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQGEAYPIFTVVALAK 289 Query: 240 EEALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRL 299 ++ L DW + +V G V+LLLA+I G RL+ + R RAE +A+ A EL+ L Sbjct: 290 DDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAIAARQELESLYRTL 349 Query: 300 EMLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDE 359 E + +DGLT + NRR+ D L E R R+G +L+L+MIDVD FKQ+ND YGH AGD Sbjct: 350 EAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHFKQFNDTYGHAAGDV 409 Query: 360 CLRRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRG 419 CLR+VA + RR GD+ ARYGGEE A++LP A +A ++ ++ LE+ H Sbjct: 410 CLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRVVQAVRGLEIAHER 469 Query: 420 NPVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQ 465 +P+GVVT+SVGV +L S + L+ +AD ALY AK EGR++ Sbjct: 470 SPMGVVTISVGVASLASGKSLLIEPRELIDSADGALYRAKEEGRDR 515 >gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 230 bits (587), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 225/418 (53%), Gaps = 22/418 (5%) Query: 65 QLDGLYVFDEHGKRLLTS--SAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTGR 122 + L + D G +TS SA P N S+R YF HRD D G + + + + Sbjct: 98 HITALAILDADGYVRVTSRRSASPSVVVNYSERTYFTVHRDSADAGLFISRPIKANLGNE 157 Query: 123 W-IIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPF 181 ++ +S+RL+ DGSF GV+L LD+++F L+ + +G+ G ++L DG R+P+ Sbjct: 158 LPVVVLSKRLSRKDGSFDGVVLMALDMSYFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPY 217 Query: 182 DPGYINRDFSQGRLF--LEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAR 239 P I R+ + F L + G + D +R +++ + PL++++ + Sbjct: 218 HPSSIGREITNNPNFQRLRAMLVDNDGNFFARAHTDGVERLYTFRRIPDAPLIVLLGRSE 277 Query: 240 EEALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRL 299 W + +VLLLL I L G + + +R E + + A +L Sbjct: 278 RFIFKTWYDTLY----SVLLLLIIFTA----LAGVLLMLVRRE------LLKRVAAEKQL 323 Query: 300 EMLAHQDGLTGLANRRHLDTMLETEFKRAERS-GAALALIMIDVDFFKQYNDLYGHQAGD 358 E LA DGLTGL NRR LD L ++R++RS A + + IDVD+FK+YND YGH+ GD Sbjct: 324 EDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTAGFSTLFIDVDYFKRYNDTYGHEMGD 383 Query: 359 ECLRRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHR 418 L+ VA VL+E +R DLA RYGGEE +LL TD GA +A++L I +PH Sbjct: 384 TVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTDEHGALRMAQQLCEAIYNRGIPHS 443 Query: 419 GNPVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPMKTAP 476 G+P+GV++VS+GV + P + ++ +L AAD ALY AK EGRN+V +A P + P Sbjct: 444 GSPLGVISVSIGVATMNRAPH--QRMEDVLNAADHALYIAKREGRNRVCVAHPGQNDP 499 >gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 229 bits (584), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 145/384 (37%), Positives = 213/384 (55%), Gaps = 24/384 (6%) Query: 93 SDRDYFIWHRDHDDVGPHVGKAL-LSRSTGRWIIPMSRRLNHPDGSFAGVLLATLDINHF 151 +DR YFI HRD VG +V + + S ++ +S+RL++ DGSFAGV++ LD+ +F Sbjct: 148 ADRAYFIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLAYF 207 Query: 152 NQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGYINRDFSQGRLF--LEGLPHSPFGYLE 209 +L+ + +G G I+L +G R+P+ I RD SQ F L + G Sbjct: 208 RELFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSEEEGSFF 267 Query: 210 VVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALADWKQQTFVYGAAVLLLLAIIGVF-G 268 + D +R +++ + PL++ V A E W++ + AVL+ LAI G+ Sbjct: 268 AHATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFY----AVLVSLAIFGLLTA 323 Query: 269 WRLIG-QIELRLRAEDRALQAMGELQMANHRLEMLAHQDGLTGLANRRHLDTMLETEFKR 327 W L+ + ELR R A +LE LA DGLT L NRR LD L+ ++R Sbjct: 324 WLLLHVRQELRRRV------------TAERQLEALARTDGLTDLLNRRALDEALQATWER 371 Query: 328 AERS-GAALALIMIDVDFFKQYNDLYGHQAGDECLRRVAGVLKERQRRPGDLAARYGGEE 386 +R+ GA+ +++ IDVD+FK YND YGH+ GD L+ VA L R R D A RYGGEE Sbjct: 372 CQRNLGASFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEE 431 Query: 387 MAMLLPCTDAEGACAVAEKLRAGIQALELPHRGNPVGVVTVSVGVCALELLPSAARSVQA 446 +LL TD +GA +A++L ++ + H +P+ VVT+SVGV LE R V+ Sbjct: 432 FVVLLEQTDLQGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLE--RDHHRRVED 489 Query: 447 LLGAADAALYEAKHEGRNQVRLAA 470 +L AADAALY AK GR++V L++ Sbjct: 490 VLNAADAALYRAKQAGRDRVHLSS 513 >gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 186 bits (472), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 133/408 (32%), Positives = 206/408 (50%), Gaps = 28/408 (6%) Query: 68 GLYVFDEHGKRLLTSSA-PPLAPANNSDRDYFIWHRDHD---DVGPHVGKALLSRSTGRW 123 L + D G+ ++ S+A + P + D+F H+ H D G ++ L R R Sbjct: 83 ALGIVDTDGELVVGSAALSQILPGPYAQSDFFTAHQTHHAQGDTGLYISAPLTVRLERRM 142 Query: 124 -IIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFD 182 ++ +S+RL PDGSFAG+ L L +++F L++ + + G I+L DG R+P++ Sbjct: 143 QVVVLSKRLAQPDGSFAGISLMVLYLDYFRDLFQGLTLENDGVISLYSADGLAYMRIPYN 202 Query: 183 PGYINRDFSQG----RLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLA 238 +I + R+F P G + D + ++ V + + Sbjct: 203 EAFIGSRLNISEDLERIFSPSGPAQ--GSYFARAQQDGPRWLYTFARVPGTGWTVFIGRT 260 Query: 239 REEALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHR 298 +W + AVL L+A + LI R+R E + A+ + + Sbjct: 261 GARIFREWYNMLY----AVLFLMASFCIASIYLIR----RVRVELQRRSAL------DQQ 306 Query: 299 LEMLAHQDGLTGLANRRHLDTMLETEFKRAERS-GAALALIMIDVDFFKQYNDLYGHQAG 357 LE LA D LT L NRR LD L +KRAE + A +L+ +DVDFFK YND YGH+AG Sbjct: 307 LEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDTYGHKAG 366 Query: 358 DECLRRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPH 417 D L V+ + R D + RYGGEE +LL TD GA VA+++ + IQ+L++PH Sbjct: 367 DYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQSLKIPH 426 Query: 418 RGNPVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQ 465 +P ++TVS+GV + LL S++ ++ ADAALY AK +GRN+ Sbjct: 427 ERSPFDILTVSIGVTS--LLREHHSSIEDVVKDADAALYRAKQDGRNK 472 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,521,104 Number of extensions: 65938 Number of successful extensions: 296 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 236 Number of HSP's successfully gapped: 41 Length of query: 481 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 392 Effective length of database: 1,198,455 Effective search space: 469794360 Effective search space used: 469794360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)