BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0043.p
         (898 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312845|ref|YP_003776937.1| aminopeptidase N [Herbaspirillu...  1853   0.0  

>gi|300312845|ref|YP_003776937.1| aminopeptidase N [Herbaspirillum
           seropedicae SmR1]
          Length = 898

 Score = 1853 bits (4799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/898 (99%), Positives = 898/898 (100%)

Query: 1   MRTDTPQTIYRKDYAAPHYLADTVEMGFDLDPADTRVATRITMTRNPAAKSRDLVLFGEE 60
           MRTDTPQTIYRKDYAAPHYLADTVEMGFDLDP+DTRVATRITMTRNPAAKSRDLVLFGEE
Sbjct: 1   MRTDTPQTIYRKDYAAPHYLADTVEMGFDLDPSDTRVATRITMTRNPAAKSRDLVLFGEE 60

Query: 61  LELVALRLNGKLLTQAKGDFRIAGGVLTIPAAPAKVVLEIETLVHPDRNTSLMGLYVSNG 120
           LELVALRLNGKLLTQAKGDFRIAGGVLTIPAAPAKVVLEIETLVHPDRNTSLMGLYVSNG
Sbjct: 61  LELVALRLNGKLLTQAKGDFRIAGGVLTIPAAPAKVVLEIETLVHPDRNTSLMGLYVSNG 120

Query: 121 NFFTQCEAEGFRKITYFPDRPDVMAKFTVMLRADKARYPVLLSNGNLIEEGDLPDGRHYA 180
           NFFTQCEAEGFRKITYFPDRPDVMAKFTVMLRADKARYPVLLSNGNLIEEGDLPDGRHYA
Sbjct: 121 NFFTQCEAEGFRKITYFPDRPDVMAKFTVMLRADKARYPVLLSNGNLIEEGDLPDGRHYA 180

Query: 181 KWEDPFKKPSYLFALVAGNLVCQEETVRLHSGRDALLQVWVEEGNLDKTQHAMDSLKNSI 240
           KWEDPFKKPSYLFALVAGNLVCQEETVRLHSGRDALLQVWVEEGNLDKTQHAMDSLKNSI
Sbjct: 181 KWEDPFKKPSYLFALVAGNLVCQEETVRLHSGRDALLQVWVEEGNLDKTQHAMDSLKNSI 240

Query: 241 TWDVQRFGLDLDLDRFMIVAVGDFNMGAMENKGLNIFNTKYVLANPRIATDVDFANIEAV 300
           TWDVQRFGLDLDLDRFMIVAVGDFNMGAMENKGLNIFNTKYVLANPRIATDVDFANIEAV
Sbjct: 241 TWDVQRFGLDLDLDRFMIVAVGDFNMGAMENKGLNIFNTKYVLANPRIATDVDFANIEAV 300

Query: 301 VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ 360
           VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ
Sbjct: 301 VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ 360

Query: 361 AQFPEDAGPMAHPVRPDSYVEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYFER 420
           AQFPEDAGPMAHPVRPDSYVEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYFER
Sbjct: 361 AQFPEDAGPMAHPVRPDSYVEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYFER 420

Query: 421 HDGQAVTCDDFRAAMADANGRDLSQFERWYSQAGTPQVQASVDYDAKRKTLTLTLEQSCP 480
           HDGQAVTCDDFRAAMADANGRDLSQFERWYSQAGTPQVQASVDYDAKRKTLTLTLEQSCP
Sbjct: 421 HDGQAVTCDDFRAAMADANGRDLSQFERWYSQAGTPQVQASVDYDAKRKTLTLTLEQSCP 480

Query: 481 PTPGQKKKQPFHIPVAVGLLDAQGRDLALTLEGEKKAGPTTRVLELTKAKQSFRFVNVEQ 540
           PTPGQKKKQPFHIPVAVGLLDAQGRDLALTLEGEKKAGPTTRVLELTKAKQSFRFVNVEQ
Sbjct: 481 PTPGQKKKQPFHIPVAVGLLDAQGRDLALTLEGEKKAGPTTRVLELTKAKQSFRFVNVEQ 540

Query: 541 KPVPSLLRGFSAPVLLQYDYSDAELAFLMAHDSDAFNRWEAGQRLATRRLLNLTVAVQAA 600
           KPVPSLLRGFSAPVLLQYDYSDAELAFLMAHDSDAFNRWEAGQRLATRRLLNLTVAVQAA
Sbjct: 541 KPVPSLLRGFSAPVLLQYDYSDAELAFLMAHDSDAFNRWEAGQRLATRRLLNLTVAVQAA 600

Query: 601 RQSGHVVSVDTVLNNLEHDGALANALRATLRDEALDPAFRELVLTLPSETMIAEQMEIID 660
           RQSGHVVSVDTVLNNLEHDGALANALRATLRDEALDPAFRELVLTLPSETMIAEQMEIID
Sbjct: 601 RQSGHVVSVDTVLNNLEHDGALANALRATLRDEALDPAFRELVLTLPSETMIAEQMEIID 660

Query: 661 PHAIHVARQFLRRSLARELREDLLAAYHANQTPGEYSPDAASAGRRALKNVALSYLAELD 720
           PHAIHVARQFLRRSLARELREDLLAAYHANQTPG+YSPDAASAGRRALKNVALSYLAELD
Sbjct: 661 PHAIHVARQFLRRSLARELREDLLAAYHANQTPGDYSPDAASAGRRALKNVALSYLAELD 720

Query: 721 DEQAMTLAQQQDQQANNMTDRLAALSAILNSAAPGKSEALQRFYAEFEQEALVIDKWFTL 780
           DEQAMTLAQQQDQQANNMTDRLAALSAILNSAAPGKSEALQRFYAEFEQEALVIDKWFTL
Sbjct: 721 DEQAMTLAQQQDQQANNMTDRLAALSAILNSAAPGKSEALQRFYAEFEQEALVIDKWFTL 780

Query: 781 QATARNADVNTVRTLAEHPAFTLKNPNRARSLIFSFCNGNPSAFHAPDGNGYSFWAEQVI 840
           QATARNADVNTVRTLAEHPAFTLKNPNRARSLIFSFCNGNPSAFHAPDGNGYSFWAEQVI
Sbjct: 781 QATARNADVNTVRTLAEHPAFTLKNPNRARSLIFSFCNGNPSAFHAPDGNGYSFWAEQVI 840

Query: 841 ALNASNPQVAARLARSLDRWRKYSPALQEKMRLALQQVAAAPKLSRDVAEVVTKALAN 898
           ALNASNPQVAARLARSLDRWRKYSPALQEKMRLALQQVAAAPKLSRDVAEVVTKALAN
Sbjct: 841 ALNASNPQVAARLARSLDRWRKYSPALQEKMRLALQQVAAAPKLSRDVAEVVTKALAN 898


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,665,363
Number of extensions: 109851
Number of successful extensions: 326
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 1
Length of query: 898
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 804
Effective length of database: 1,174,780
Effective search space: 944523120
Effective search space used: 944523120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)