BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0026.p
         (426 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312860|ref|YP_003776952.1| Lipid A core - O-antigen ligase...   670   0.0  
gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase...   265   7e-72

>gi|300312860|ref|YP_003776952.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/426 (90%), Positives = 403/426 (94%)

Query: 1   MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGK 60
           MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLML+LGAAVLLRKGK
Sbjct: 1   MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLMLGAAVLLRKGK 60

Query: 61  PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP 120
           PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP
Sbjct: 61  PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP 120

Query: 121 GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRL 180
           GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILA CGLARAIRL
Sbjct: 121 GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILAACGLARAIRL 180

Query: 181 QQPLRWKLMHAAGLILGLTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGS 240
           QQPLRWKLMHAAGLILGLTASILSGSRGSWLA PVCA LAAWLLLRAGY+RLVLQ+ AGS
Sbjct: 181 QQPLRWKLMHAAGLILGLTASILSGSRGSWLALPVCATLAAWLLLRAGYARLVLQLGAGS 240

Query: 241 LTMLFCLALLPQSPLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAG 300
           L ML CLALLPQSPLSAR+RLA+ +TN YVQRADADSSVG RLEMWRIG+ LAPQHLL G
Sbjct: 241 LAMLVCLALLPQSPLSARLRLALAETNDYVQRADADSSVGTRLEMWRIGMQLAPQHLLVG 300

Query: 301 WGKQGMMQAKHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQ 360
           WGKQGM+ AKHE+V QG ASPSVDEHTHLHNEYLDALVKRG+PGLAA+LVLYLLPLWLF 
Sbjct: 301 WGKQGMIDAKHEMVSQGQASPSVDEHTHLHNEYLDALVKRGIPGLAALLVLYLLPLWLFH 360

Query: 361 RRQRLVTGSEARLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAMSQEQPV 420
           R++RL  G EARLAA AGVM+VLSYL FGLTQAFLTHNNGVMLYAFLCSILWA+ QEQ V
Sbjct: 361 RQRRLAAGYEARLAASAGVMMVLSYLAFGLTQAFLTHNNGVMLYAFLCSILWALCQEQAV 420

Query: 421 SPSNTA 426
            P+NTA
Sbjct: 421 HPANTA 426


>gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  265 bits (676), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 243/397 (61%), Gaps = 4/397 (1%)

Query: 19  MPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLS 78
           M  ++S +VFL  A+SL+VPSGFS+GS++L LG+  L+ K   R  L RED LI+  LL+
Sbjct: 1   MGSFTSFSVFLFSAISLIVPSGFSVGSVLLALGSLTLVNK-SVRTTLNREDRLILAVLLA 59

Query: 79  YFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLS 138
           YF V   + L+H   G+EYD PLRF LA  ALLLLRAYPP P A W+G  +G +GAG+ +
Sbjct: 60  YFAVTVAMLLLHHESGKEYDLPLRFFLAAAALLLLRAYPPAPAAFWSGLILGGIGAGVFA 119

Query: 139 LWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGLILGL 198
            WQ+ A    R  G TN IQYG+I+ ++ IL   G+  A++ +    W  +   G ++GL
Sbjct: 120 GWQYFAHNV-RATGYTNAIQYGDISFIIGILCLTGITWAMQQRAARAWVALLIVGGVMGL 178

Query: 199 TASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVL-QMSAGSLTMLFCLALLPQSPLSA 257
             S+ +GSRGSW+A P+C ++      R+  +R V   ++A    +     ++P +   A
Sbjct: 179 MGSLFTGSRGSWVALPICLLILCVYYSRSIPARYVWGSLAALVAAIAIVFTVMPSTDFRA 238

Query: 258 RIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQG 317
           RI LA  + + Y+Q+ DADSS+G R+EMWR G     +  + G GK G +Q +   +  G
Sbjct: 239 RISLAFSEASTYMQKKDADSSIGTRMEMWRAGAMAVAEAPVLGMGKAGFVQWETGQIEAG 298

Query: 318 LASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGSEARLAAIA 377
             +  +  + H++NE+LDALVKRGVPGL  +L LY +PL LF  R +     +A+  A+ 
Sbjct: 299 KINALMSGNNHVYNEWLDALVKRGVPGLLVLLALYFVPLRLFIARLKSAP-EQAKPYALG 357

Query: 378 GVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAM 414
           GV+L+++Y+ FG +Q FL HN+GVM   F   ILW M
Sbjct: 358 GVLLIVNYIGFGFSQVFLAHNSGVMTLGFTMVILWGM 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,211,851
Number of extensions: 46014
Number of successful extensions: 277
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,203,190
Effective search space: 406678220
Effective search space used: 406678220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)