BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0025.p (578 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 1168 0.0 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 293 3e-80 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 274 1e-74 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 259 3e-70 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 257 2e-69 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 1168 bits (3022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 575/578 (99%), Positives = 576/578 (99%) Query: 1 MLSNNMKRLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLV 60 MLSNNMKRLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLV Sbjct: 1 MLSNNMKRLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLV 60 Query: 61 PVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINS 120 PVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINS Sbjct: 61 PVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINS 120 Query: 121 MMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGK 180 MMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGK Sbjct: 121 MMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGK 180 Query: 181 RLKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAA 240 RLKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAA Sbjct: 181 RLKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAA 240 Query: 241 FSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGP 300 FSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGP Sbjct: 241 FSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGP 300 Query: 301 LQRGMAAAEEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVE 360 LQRGMAAAEEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVE Sbjct: 301 LQRGMAAAEEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVE 360 Query: 361 AGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLQSLRQQIAMVNQNTV 420 AGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISL SLRQQIAMVNQNTV Sbjct: 361 AGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTV 420 Query: 421 LFDDTLAANIAYGDAHPDPARVEAAVEAAHLNDVVAGLPEGLQTRLGDNGSRLSGGQRQR 480 LFDDTLAANIAYGDA+PDPARVEAAVEAAHL DVVAGLPEGLQTRLGDNGSRLSGGQRQR Sbjct: 421 LFDDTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQR 480 Query: 481 VAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRI 540 VAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRI Sbjct: 481 VAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRI 540 Query: 541 VVLAHGQIAEIGTHQALLEQEGVYANLYRLQFSQQASV 578 VVLAHGQIAEIGTHQALLEQEGVYANLYRLQFSQQASV Sbjct: 541 VVLAHGQIAEIGTHQALLEQEGVYANLYRLQFSQQASV 578 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 293 bits (750), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 212/572 (37%), Positives = 313/572 (54%), Gaps = 13/572 (2%) Query: 15 PYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVG---KPAFSLWLVPVAVIGIFFIR 71 PYKK+ +A +A++V AA VPY F+ ++D GF K A + L +A+ G+ I Sbjct: 45 PYKKQFLLAGLALVVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALFGVACIL 104 Query: 72 GIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDM 131 G+AT YM++W+ R+ +LR ++A ++ F+ T G+V++ + + I + Sbjct: 105 GVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTL 164 Query: 132 VTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLA 191 V + LR+AL +G ++ L + + LT + +V+L V L + G+R++KL+R S Sbjct: 165 VGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQD 224 Query: 192 VNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQLM 251 A+ + + E A ++ F ++ E RF + E M A S + L+ Sbjct: 225 RVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILL 284 Query: 252 TATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEV 311 A+ V+ + G ++ G FI ++ L L+E+ G QR A E + Sbjct: 285 VFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERL 344 Query: 312 YKLI---DKTTERITGEALAGR-ATGQLDFVE-VGFAYP---GHEQLALKNINLHVEAGE 363 L+ + E L R A G V+ V F YP GH +L ++L V+ GE Sbjct: 345 LDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHP--SLTQLSLTVQPGE 402 Query: 364 TIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLQSLRQQIAMVNQNTVLFD 423 T+A VG SG GK+TL L+ FY G+I LDG DI + LQ+LR I +V Q+TV+F Sbjct: 403 TVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFS 462 Query: 424 DTLAANIAYGDAHPDPARVEAAVEAAHLNDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAI 483 NI +G A V AA + A ++ + LP LG+ G RLSGGQRQR+AI Sbjct: 463 ANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAI 522 Query: 484 ARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVL 543 ARA+ K+ P+L+LDEATSALD ESER VQ AL+ M GRTT VIAHRL+T++RADRI+VL Sbjct: 523 ARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVL 582 Query: 544 AHGQIAEIGTHQALLEQEGVYANLYRLQFSQQ 575 HG+I E GTH L+ ++G+YA L LQF Q Sbjct: 583 EHGRIVESGTHAELVARDGLYAGLAALQFQTQ 614 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 274 bits (701), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 187/578 (32%), Positives = 301/578 (52%), Gaps = 22/578 (3%) Query: 8 RLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFV----GKPA----FSLWL 59 RL+ PYK L + F+ + + A V PY+ L+D + G P +L+L Sbjct: 170 RLSRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYL 229 Query: 60 VPVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVIN 119 ++G + + +Y++ VS RI +LR ++ +L L ++ G ++ Sbjct: 230 S--GLLGAAVLAWGLGWARTYILALVSERIGADLRTTTYSHLLRLSQEYFGGKRTGDLMA 287 Query: 120 SMMFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTG 179 + E +I ++ L ++ A L+ +N L +VTL+ LP + ++ Sbjct: 288 RIGSETDRICVFLSLHLLDFAIDVLMIIMTAAILISINPWLALVTLLPLPFIAWMIHVVR 347 Query: 180 KRLK----KLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTM 235 RL+ K++R + +E+T V+ +T +V+K F + E RF + Sbjct: 348 DRLRHGFEKIDR----IWSEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVND 403 Query: 236 RMTAAFSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLA 295 R+ +S P +T + VV V + Q + QITVG +F+ + T L ++ Sbjct: 404 RVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMS 463 Query: 296 EINGPLQRGMAAAEEVYKLIDKTTE--RITGEALAGRATGQLDFVEVGFAYPGHEQLALK 353 I Q+ A A+ ++ ++D + + G ++ +GF Y + ++ Sbjct: 464 RIVSVTQKAAAGAKRIFDILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRY--GNRAVIR 521 Query: 354 NINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLQSLRQQIA 413 N++L + GE I VG SG GKST+V+LI FY S G IR+DG DI ++ + R+ I Sbjct: 522 NMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIG 581 Query: 414 MVNQNTVLFDDTLAANIAYGDAHPDPARVEAAVEAAHLNDVVAGLPEGLQTRLGDNGSRL 473 +V Q LF T+A NIAYG + AA AAH ++ + LP+G + +G+ G L Sbjct: 582 LVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQAL 641 Query: 474 SGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLST 533 SGG+RQR++IARA+ D ILILDEATS++DT +E+ +Q ALD L+QGRTT IAHRLST Sbjct: 642 SGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLST 701 Query: 534 IERADRIVVLAHGQIAEIGTHQALLEQEGVYANLYRLQ 571 + +ADR+VVL GQ+ E+G H+ L+ +EG Y LY+ Q Sbjct: 702 LRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQ 739 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 259 bits (663), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 199/584 (34%), Positives = 311/584 (53%), Gaps = 38/584 (6%) Query: 14 WPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVG--KPAFSLWLVPVAVIGIFFIR 71 W YK R+ +A ++ VP + + L+D + P L L ++ +R Sbjct: 33 WTYKWRVLLALAFLVGAKLANVGVPLVLKRLVDAMTITPTHPQALLVLPLGLLVAYGALR 92 Query: 72 -GIATFTS--SYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQI 128 A FT M V+ R + + Q+F + L L F+ G + + + + Sbjct: 93 LATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGV 152 Query: 129 IDMVTKVFTSILRSALTVLGLLAWLL--YLNW--VLTIVTLVLLPLVTLVV---RTTGKR 181 +V+ SIL + + + +LA+L+ Y W V+T LV L T+ V RT +R Sbjct: 153 SSLVSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTHFRR 212 Query: 182 LKKLNR-DSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAA 240 +N DS A + ++ T +K FG +++E R++ E L+ Y AA Sbjct: 213 --TMNELDSHANTRAIDSLLNYET-----VKYFGNEEFEARRYD---EGLQRYE---RAA 259 Query: 241 FSSTVPITQLMT------ATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQL 294 S ++ L T A AV +++ A + +G +T+G V M+ L PL L Sbjct: 260 VKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFL 319 Query: 295 AEINGPLQRGMAAAEEVYKLIDKTTE-RITGEALAGRATG-QLDFVEVGFAYPGHEQLAL 352 + +++ +A E ++ L+++ E + +A + G L F V F+Y + Q+ L Sbjct: 320 GVLYREIKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYERNRQI-L 378 Query: 353 KNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLQSLRQQI 412 +++ V+AG T A VG SG GKSTL L+ FY +G IR+DG+D+ T++ SLRQ I Sbjct: 379 FDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAI 438 Query: 413 AMVNQNTVLFDDTLAANIAYGDAHPDPARVEAAVEAAHLNDVVAGLPEGLQTRLGDNGSR 472 +V Q+TVLF+DT+ NIAYG ++ AA +AA+++D + LP+G + +G+ G + Sbjct: 439 GIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLK 498 Query: 473 LSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLS 532 LSGG++QRVAIAR + KD ILI DEATSALD+ +E+A+Q L+ + + RTT VIAHRLS Sbjct: 499 LSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLS 558 Query: 533 TIERADRIVVLAHGQIAEIGTHQALLEQEGVYANLYRLQFSQQA 576 TI A +I+VL HG+I E GTH LL G+YA ++ QQA Sbjct: 559 TIVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQMW---LRQQA 599 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 257 bits (657), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 172/562 (30%), Positives = 293/562 (52%), Gaps = 12/562 (2%) Query: 16 YKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIAT 75 Y+K LA + +V + P FQV++DK V +L ++ V +I + T Sbjct: 159 YRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLT 218 Query: 76 FTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDMVTKV 135 + + S++I EL ++F+ +L LPL ++ G I + + E++ I +T Sbjct: 219 GIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGDSI-ARVRELENIRSFLTGN 277 Query: 136 FTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAVNAE 195 +++ + L +L+ + L+++ L +P+ L+ L++ D +AE Sbjct: 278 AMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAE 337 Query: 196 MTQVIEETTRAQQVIKIFGGQDYEKERFNRR-----AENLRSYTMRMTAAFSSTVPITQL 250 + ET +K + +++++++ A L + + + A+ + + +++L Sbjct: 338 NQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGAVGL-VSKL 396 Query: 251 MTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEE 310 +T V ++ + AL+ N +++VG V+F + +P+ +LA++ Q+ + Sbjct: 397 VT---VGIMWLGALLVVKN-EMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGISMSR 452 Query: 311 VYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFVGM 370 + ++D TE R G + F V F Y ++ ++L + GE I VG Sbjct: 453 LADVLDARTEVAGNRTRLPRVNGAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGR 512 Query: 371 SGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLQSLRQQIAMVNQNTVLFDDTLAANI 430 SG GKSTL L+ Y C +G I +DG+DI I SLRQQI +V Q LF ++ NI Sbjct: 513 SGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNI 572 Query: 431 AYGDAHPDPARVEAAVEAAHLNDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAIYKD 490 A D ++ A + A +D + LPEG T +G+ GS LSGGQRQR+AIARA+ + Sbjct: 573 ALADPSTPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITN 632 Query: 491 APILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAE 550 ILI DEATSALD ESE+ +Q + ++ GRT +IAHRLS + ADRI+V+ G++AE Sbjct: 633 PGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAE 692 Query: 551 IGTHQALLE-QEGVYANLYRLQ 571 G+H L++ G+YA+L+RLQ Sbjct: 693 SGSHDELIDLPGGIYAHLHRLQ 714 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,499,539 Number of extensions: 59020 Number of successful extensions: 595 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 459 Number of HSP's successfully gapped: 130 Length of query: 578 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 488 Effective length of database: 1,193,720 Effective search space: 582535360 Effective search space used: 582535360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)