BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0023.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   676   0.0  
gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...   301   4e-83

>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/328 (98%), Positives = 326/328 (99%)

Query: 1   MNVPTQEEIKAHPGNGKPSFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVS 60
           MNVPTQEEIKAHPGNGKPSFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVS
Sbjct: 1   MNVPTQEEIKAHPGNGKPSFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVS 60

Query: 61  EDHQRRLKQLEAMYRVKTELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDR 120
           EDHQRRLKQLEAMYRVKTELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDR
Sbjct: 61  EDHQRRLKQLEAMYRVKTELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDR 120

Query: 121 VLYLDADILCFNRLDALVDMDISQDIAVVVPDAPVTLQRRVAALELAHKEYFNGGVIFIN 180
           VLYLDADILCFNRLDALVDMDISQDIAVVVPDAPVTLQRRVAALELAHKEYFNGGVIFIN
Sbjct: 121 VLYLDADILCFNRLDALVDMDISQDIAVVVPDAPVTLQRRVAALELAHKEYFNGGVIFIN 180

Query: 181 IPKWLAEDITPKTLDALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVN 240
           IPKWLAEDITPKTLDALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVN
Sbjct: 181 IPKWLAEDITPKTLDALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVN 240

Query: 241 KFALKPVGKAIFVHFAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRM 300
           KFALKPVGKAIFVHFAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRM
Sbjct: 241 KFALKPVGKAIFVHFAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRM 300

Query: 301 HSRFMYRQGRPLESLKWYLRYLRKRGSR 328
           HSRFMYRQGRPLESLKWYLRYL KR ++
Sbjct: 301 HSRFMYRQGRPLESLKWYLRYLGKRAAK 328


>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score =  301 bits (772), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/308 (46%), Positives = 201/308 (65%), Gaps = 4/308 (1%)

Query: 19  SFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVSEDHQRRLKQLEAMYRVKT 78
           ++HIAFCVDN+YFRAMG  +AS+VANNP + F FHV AF +S+D+ RR++ +E    +K 
Sbjct: 21  AWHIAFCVDNHYFRAMGAMLASMVANNPGRRFVFHVFAFAISDDNARRMRSIEENPNIKV 80

Query: 79  ELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDRVLYLDADILCFNRLDALV 138
             HL+    F +F   +  S+YSLS FTRL++P  L + TDRVLY+DAD+LC   L+ L+
Sbjct: 81  VPHLVAQETFAEFGEMIAKSYYSLSTFTRLIVPATLKDQTDRVLYVDADMLCVGSLEELM 140

Query: 139 DMDISQDIAVVVPD----APVTLQRRVAALELAHKEYFNGGVIFINIPKWLAEDITPKTL 194
            MD+    A+VV D    AP     R + L L H  YFN G+++INIP+W    ++   +
Sbjct: 141 GMDLDGTNALVVDDVGWEAPTGRDGRYSVLGLKHPRYFNAGMLYINIPEWEKNKVSEAAI 200

Query: 195 DALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVNKFALKPVGKAIFVH 254
            AL+++   + FNDQDALNIVL+G+ARY+  KWNY+Y +I DL   +  + PVG A  +H
Sbjct: 201 RALVSNPDKLTFNDQDALNIVLDGQARYIPVKWNYIYSMIADLKQGRQTMSPVGDARIIH 260

Query: 255 FAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRMHSRFMYRQGRPLES 314
           FAG VKPW  WS H A  L+ RY  +S W+D+ LD  P N KE+R+++RF+ ++G     
Sbjct: 261 FAGLVKPWIDWSGHAARELYLRYHTLSAWSDLPLDAAPLNHKEMRVYARFLIKRGDYACG 320

Query: 315 LKWYLRYL 322
           L W  R+L
Sbjct: 321 LYWNARFL 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,030,208
Number of extensions: 41366
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)