BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0021.p
         (419 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase...    82   1e-16

>gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 9/248 (3%)

Query: 142 NSGSLGFMAGIAFSNAALLLGVWLLLSLQLPMSR--LQRWLS---IGAIILALGVTFLVK 196
           N  + G+   I + + + ++G+  L  +   M +   + W++   +G ++  +G  F   
Sbjct: 127 NVRATGYTNAIQYGDISFIIGILCLTGITWAMQQRAARAWVALLIVGGVMGLMGSLF-TG 185

Query: 197 TRGTWLVLPF-YAVFFIFYLRQLSMTR--KAVILLFPLLLVGVGMLSNAMVRERIVLVGS 253
           +RG+W+ LP    +  ++Y R +       ++  L   + +   ++ +   R RI L  S
Sbjct: 186 SRGSWVALPICLLILCVYYSRSIPARYVWGSLAALVAAIAIVFTVMPSTDFRARISLAFS 245

Query: 254 DIRSFADGTNKETSLGQRFQVWQGSWELFREQPWLGVGRDGFKTGLHRLSDAGKVSELVA 313
           +  ++    + ++S+G R ++W+       E P LG+G+ GF        +AGK++ L++
Sbjct: 246 EASTYMQKKDADSSIGTRMEMWRAGAMAVAEAPVLGMGKAGFVQWETGQIEAGKINALMS 305

Query: 314 ELPHSHNGMLFQMALWGVWGLIAWLLIYFVPLALFWRDLGHASVKVRTYAAMGVSLCLGY 373
              H +N  L  +   GV GL+  L +YFVPL LF   L  A  + + YA  GV L + Y
Sbjct: 306 GNNHVYNEWLDALVKRGVPGLLVLLALYFVPLRLFIARLKSAPEQAKPYALGGVLLIVNY 365

Query: 374 WVFDFSDV 381
             F FS V
Sbjct: 366 IGFGFSQV 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.143    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,253,832
Number of extensions: 52246
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 2
Length of query: 419
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,203,190
Effective search space: 398255890
Effective search space used: 398255890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 132 (55.5 bits)